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2 protocols using fam dye labeled mgb probes

1

Quantification of CDC6 and miR-3178 Expression

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Total RNA or microRNA from cultured cells were extracted with mirVana miRNA Isolation Kit (Ambion) according to the manufacturer’s instructions. Reverse transcription of mRNA was performed using the High Capacity RNA-to-cDNA kit (Applied Biosystems). TaqMan MicroRNA Reverse Transcription Kit was used to produce cDNA for TaqMan MicroRNA Assay (Applied Biosystems). Real-time PCR was performed on the 7900HT Fast Real-Time PCR System (Applied Biosystems) using the TaqMan® Universal Mastermix (Applied Biosystems). Human and mouse CDC6 expression was quantified in real-time with CDC6-specific FAM dye-labeled MGB-probes and normalized to GAPDH (Applied Biosystems). Human miR-3178 was quantified in real-time with FAM dye-labeled MGB-probes and normalized to RNU66 or snU6 (Applied Biosystems).
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2

Quantitative Real-Time PCR for SMN Genes

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The copy number of two SMN genes, SMN1 and SMN2, was determined by a quantitative real-time PCR assay as previously described (15 (link)). Briefly, 50ng of genomic DNA was amplified in the presence of 300 nM of forward and reverse primers and 100 nM of FAM dye-labeled MGB probes (Applied Biosystems, Carlsbad, CA). The PCR was conducted as described previously (15 (link)), with an exception in using RNase P as the internal endogenous control (Applied Biosystems, Carlsbad, CA). The copy number of SMN genes was determined by using the ABI7500 SDS software and the CopyCaller v2.0 software from Applied Biosystems.
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