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3730xl dna analyzer platform

Manufactured by Thermo Fisher Scientific
Sourced in United States

The 3730xl DNA Analyzer platform is a high-performance capillary electrophoresis-based system designed for DNA sequencing and fragment analysis applications. The platform features advanced optical and fluidic systems to enable efficient and reliable DNA separation and detection.

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2 protocols using 3730xl dna analyzer platform

1

Rapid Amplification of Arabian Camel HSPB-1

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Rapid amplification of cDNA ends (RACE) was used to identify and isolate the 5′- and 3′-end of Arabian camel HSPB-1 by using a RACE kits (Invitrogen, Carlsbad, CA, USA). Total RNA was annealed with 5′- and 3′-end primers (Table 1), and reversely transcribed respectively to the respective 5′- and 3′-cDNA. The resulting first-stranded 5′- and 3′-cDNA were then utilized as templates in PCR. The cycling program was set for five cycles of 95°C for 4 min; 5 cycles of 95°C for 15 s, 70°C for 15 s, 72°C for 3 min; 5 cycles of 95°C for 15 s, 68°C for 15 s, 72°C for 3 min; 5 cycles of 95°C for 15 s, 65°C for 15 s, 72°C for 3 min; 25 cycles of 95°C for 15 s, 60°C for 15 s, 72°C for 3 min; 1 cycle of 72°C for 5 min. The purified nested PCR product was ligated into pcDNA5/FRT/TO GFP-tagged vector (a gift from Harm Kampinga; Addgene plasmid No., 19487) [26 (link)] by using BamHI (NEB R3136S) and NotI (NEB R3189S) restriction sites. Subsequently, 5 ul of the ligation mixture was used as a template to transform chemically modified DH5α competent cells (ThermoFisher Scientific). The cloned Arabian camel HSPB-1 was sequenced using Applied Biosystems 3730xl DNA Analyzer platform (Applied Biosystems, Foster City, USA). The conditions of the chain termination PCR were as follows: one cycle at 94°C for 35 s, followed by 25 cycles at 94°C for 40 s, 50°C for 35 s, and 60°C for 1 min.
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2

Avian Mitochondrial Genome Sequencing

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Mitochrondrial control region DNA sequences were available from 562 birds (Friesen et al., 2007) . These data were augmented with new data obtained using primers OcL61 and H530 (Friesen et al., 2007; Smith et al., 2007 ; Table 1), following the protocols from Smith et al. (2007) . Three individuals per sampling location, for a total of 69 birds, were also sequenced for a 1,045 base pair (bp) fragment of the cytochrome b gene to help resolve phylogenetic relationships, using the primers b6 and 23 (Wallace et al., 2017) . The PCR cycle consisted of denaturation for 3 minutes at 95°C, followed by 35 cycles of 95°C for 30 seconds, 50°C for 45 seconds, and 72°C for 45 seconds, finishing with 72°C for 3 minutes (Patterson et al., 2011; Wallace et al., 2017) . PCR products were sequenced by Genome Quebec (McGill University, Montreal) on a 3730xl DNA Analyzer Platform (Applied Biosystems). Sequence quality and variable sites were confirmed from chromatograms by eye and aligned using Geneious v.6.1.5 (Kearse et al., 2012) .
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