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177 protocols using bz x analyzer

1

Quantitative Analysis of Kidney Histology

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Digital images of over 30 glomeruli or over 30 tubulointerstitial areas randomly selected from each mouse were obtained at 400× magnification using an All-in-One Fluorescence Microscope BZ-X710 (Keyence, Osaka, Japan). The size and number of total cells in each glomerulus were determined using PAS-stained sections. The number of B220+ B-cells, CD3+ T-cells, Iba1+ macrophages, and CD34+ capillaries observed in the digital images of glomeruli were counted using immunohistochemical sections and a BZ-X Analyzer (Keyence). Further, glomerular damage was semi-quantitatively scored according to methods described by Ichii et al. [23 (link)]. For TILs, the numbers of B220+ B-cells, CD3+ T-cells and IL-1F6/IL-36α+ damaged tubules throughout the cortex were counted. Additionally, CD34+ capillaries, Iba1+ macrophages, and αSMA+ reaction areas in the tubulointerstitium were counted using immunohistochemical sections and a BZ-X Analyzer (Keyence), based on digital images of the renal cortex.
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2

Immunostaining of Liver Tissue Samples

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Liver tissue samples were collected at 6 h after the injection of TNF-α or ConA, fixed in 10% formalin and embedded in paraffin. Immunostaining was performed in the same way as human pathological examination. TF antibody (ab151748; Abcam), hypoxia-inducible factor (HIF)-1α antibodies (NB100-479; Novus Biologicals), HIF-2α antibodies (NB100-122; Novus Biologicals), LDH-V antibody (ab85472; Abcam) and vascular endothelial growth factor (VEGF)-A antibody (ab183100; Abcam) were used as the first antibody. Secondary goat anti-rabbit antibodies (Histofine Simple Stain kit; Nichirei Bioscience) was applied. The sections were visualized under a Keyence BZ-X700 microscope (Keyence). Positive areas in five randomly selected microscopic fields (x40 magnification) per section were measured using analysis software (BZ-X analyzer, Keyence, Osaka, Japan). For pimonidazole staining, Hypoxyprobe Omni kit (Abcam) was used according to the manufacturer's protocol (21 (link)). Positive areas in five randomly selected microscopic fields (magnification, x40) per section were measured using analysis software (BZ-X analyzer; Keyence) and the mean percentage of positive area was calculated.
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3

Superoxide Production in Aortic Rings and PVAT

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The superoxide production of aortic rings and PVAT were assessed with dihydroethidium (DHE) (D11347, Invitrogen, MA, USA) as previously described [20 (link)]. The frozen sections of aortic rings both without and with PVAT were cut into 10 µm thick sections and placed on glass slides. The samples were incubated at room temperature for 30 min with DHE (2 × 10−6 mol/L) and protected from light. Images of the samples were observed using a microscopic system (BZ-X710, Keyence, Osaka, Japan) with an excitation wavelength of 540 nm and an emission wavelength of 605 nm. The fluorescence intensity of the DHE staining was measured using a BZX analyzer (Keyence, Osaka, Japan). In addition, we employed the tempol (176141, Sigma-Aldrich, MO, USA), a superoxide scavenger, in order to test the contribution of superoxide production for the aorta and PVAT. We incubated the aortic rings both without and with PVAT, with tempol (10−4 mol/L) for 1 h, and then made the slides of these samples with tempol. The samples were incubated at room temperature for 30 min with DHE (2 × 10−6 mol/L) and protected from light. Images of the samples were observed using a microscopic system (BZ-X710, Keyence, Osaka, Japan) with an excitation wavelength of 540 nm and an emission wavelength of 605 nm. The fluorescence intensity of the DHE staining was measured using a BZX analyzer (Keyence, Osaka, Japan).
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4

Comprehensive Histometric Analysis of Murine Tissues

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HE-stained pancreatic sections (3 sections of each mouse, right and left lobes respectively), HE-stained ovarian serial sections (per 100-μm-thick of each mouse), and IHC-performed liver sections (1 section of each mouse) were converted to virtual slides using Nano Zoomer 2.0 RS (Hamamatsu Photonics Co., Ltd.; Hamamatsu, Japan). For HE-stained sections, NDP. view2 (Hamamatsu Photonics Co., Ltd.) was utilized to measure the area and number of pancreatic islets and corpora lutea. A BZ-X Analyzer (Keyence, Osaka, Japan) was employed to measure the pancreatic area. The measured values from each pancreatic lobe (over 30 islets randomly selected from the same HE-stained pancreatic 3 sections) were utilized for histoplanimetric analysis. Regarding IHC sections, glucagon+ or proinsulin/insulin+ areas were quantified using a BZ-X Analyzer (Keyence; over 35 islets of each lobe in a section from each mouse), and their area ratio to pancreatic islets was calculated. For liver analysis, ADRP/Perilipin 2+ lipid droplets having over 5 μm of diameter were counted (six fields of view; 300×300 μm2 in a section of each mouse).
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5

Nrf2 and Nramp1 Expression in Alveolar Macrophages

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Cells from BAL fluids were prepared using cytospin, then fixed in 4% paraformaldehyde, permeabilized in 0.5% Triton X-100, and immunostained with an anti-Nrf2 rabbit polyclonal antibody (H-300; Santa Cruz Biotechnology) or anti-Nramp1 mouse monoclonal antibody (E2; Santa Cruz Biotechnology) overnight at 4°C. Cells were then stained with a secondary antibody, DyLight 488-conjugated goat anti-rabbit IgG (Abcam, Cambridge, England) or fluorescein isothiocyanate (FITC)-conjugated goat-anti-mouse IgG (Jackson ImmunoResearch), and mounted on slides with 4′,6-diamidino-2-phenylindole (DAPI) mounting medium (Thermo Fisher Scientific). Immunofluorescence images were obtained and analyzed using a BZX710 fluorescence microscope and a BZ-X analyzer (Keyence, Osaka, Japan). Nrf2 expression was quantified in fluorescence images by calculating the mean Nrf2 density in alveolar macrophage nuclei in 5 to 10 randomly chosen areas (50 to 100 cells/area). Nramp1 expression was quantified in fluorescence images by calculating the mean Nramp1 density in alveolar macrophages in 5 to 10 randomly chosen areas (50 to 100 cells/area).
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6

Quantifying Tumor-Infiltrating T Cells

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To analyze T cell infiltration in the tumor tissues, the tumor mass was resected 9 days after i.v. administration of CAR‐T cells, fixed with 10% formaldehyde, and then embedded with paraffin. The tissue sections were analyzed by H&E staining or immunohistochemical (IHC) staining with rabbit anti‐CD4 mAb (clone SP35; Roche), rabbit anti‐CD8 mAb (clone SP57; Roche), rabbit anti‐Granzyme B polyclonal Ab (Roche) and mouse anti‐PD‐1 mAb (clone NAT105; Roche). Microscopic analyses for H&E and IHC samples were conducted using a BZ‐X710 fluorescence microscope and BZ‐X analyzer (KEYENCE).
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7

Quantifying Cardiac Organoid Beating

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We observed beating cardiac organoids before and after the administration of several compounds. Videos of the spontaneously beating cardiac organoids were recorded for 5 min at 37°C for each condition using a BZX-710 (Keyence, Osaka, Japan). Videos were converted to a series of TIFF format pictures, and the area of the cardiac organoids was measured using the BZ-X Analyzer software program (Keyence). The measured areas were graphed using the Excel software program (Microsoft Excel, Microsoft Co., Ltd., Redmond, WA., USA) to visualize the change in the beating in the fractional area; the beats per minute and contraction amplitude were calculated. The contraction amplitudes were calculated as the fractional area change amplitude between contraction and relaxation.
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8

Histological analysis of adipose tissue

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Tissue samples were fixed in 4% paraformaldehyde solution. The paraffin-embedded sections were stained with hematoxylin and eosin by standard procedures for histological analysis or stained for CCR7, CD11c, and F4/80 protein by immunohistochemistry. For immunohistochemistry, anti-CCR7 (1:150; MyBioSource, San Diego, California, USA), anti-CD11c (1:350; Cell signaling Technology, Beverly, Massachusetts, USA), and anti-F4/80 (1:500; Abcam, Cambridge, UK) antibodies were used. Adipocyte and droplet sizes were measured using a microscope (BZ-9000, Keyence BZ-X Analyzer).
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9

Aorta-Ring Culture for SMC Migration

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For aorta‐ring cultures, the aortae were removed and opened out, and the endothelium was removed by gentle abrasion, as described.23 After the aorta was cut into 1‐×1‐mm explants, the explants were individually plated with the lumen side down into collagen type 1–coated 24‐well plates and cultured in 500 μL of DMEM (Dulbecco’s Modified Eagle Medium) containing transferrin, insulin, 0.1% BSA (bovine serum albumin), and platelet‐derived growth factor BB (50 ng/mL; PeproTech, London, UK). At the indicated time points, we performed a quantitative analysis of SMC sprouts at the edge of the explants using a BZ‐X700 microscope and a BZ‐X Analyzer (Keyence) under ×200 magnification. The SMC migratory ability is expressed as the sprouted total cell numbers and areas (average of 5–7 explants for each animal).
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10

Quantitative Analysis of Immunostaining and Electrophysiology

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Immunostaining data were quantified, analyzed with ImageJ (United States National Institutes of Health) and BZ-X Analyzer (Keyence BZ-X710 microscope, Itasca, IL, United States) software. Electrophysiological data were analyzed by Clampfit10 (Molecular Devices, San Jose, CA, United States). Statistical analyses were performed using OriginPro 2020 software. Graphs were generated using Canvas X (Canvas GFX Inc., Boston, MA, United States). Simple comparisons of the means and standard errors of the mean (SEMs) were performed using a Student’s t-test. Multiple comparisons of means and SEMs were performed by a one-way ANOVA (with/without repeated measures) analysis followed by Tukey’s test. p values < 0.05 were considered significant.
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