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Clone g a 5

Manufactured by Merck Group
Sourced in United States, Germany, Switzerland

The clone G-A-5 is a laboratory equipment product designed for genetic research and analysis. It serves as a core function in various applications, including DNA sequencing, gene expression studies, and molecular biology experiments. The product specifications and intended use are available upon request.

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9 protocols using clone g a 5

1

Immunohistochemical Analysis of Retinal Cells

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Papain was from Roche (Mannheim, Germany). All other substances used were from Sigma-Aldrich (Taufkirchen, Germany), unless stated otherwise. The following primary antibodies were used: rabbit anti-Kir4.1 (1 : 200; Sigma-Aldrich), mouse anti-GFAP (1 : 200; G-A-5 clone, Sigma-Aldrich), rabbit anti-ionized calcium binding adaptor molecule 1 (Iba1; 1 : 500, Wako, Neuss, Germany), goat anti-calretinin (1 : 500, Swant, Marly, Switzerland), mouse anti-calbindin (1 : 400, Swant), rabbit anti-PKCα (1 : 300, Santa Cruz Biotechnology, Heidelberg, Germany), rabbit anti-CRALBP (1 : 300, Santa Cruz Biotechnology) and mouse anti-glutamine synthetase (1 : 1000, Merck Millipore, Darmstadt, Germany). The following secondary antibodies were used: Cy5-conjugated donkey anti-goat, Cy3-conjugated donkey anti-rabbit, Cy2-conjugated donkey anti-mouse, Cy3-conjugated goat anti-rabbit and Cy2-conjugated goat anti-mouse. All secondary antibodies were applied in a 1 : 200 dilution and were obtained from Dianova (Hamburg, Germany). The apoptosis rate was detected using the in situ cell death detection kit, tetramethylrhodamine red (Roche).
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2

Immunocytochemical Analysis of Retinal Cell Types

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All substances were purchased from Sigma‐Aldrich (Taufkirchen, Germany) unless stated otherwise. Papain was obtained from Roche (Mannheim, Germany). Chloromethyl‐tetramethyl‐rosamine (Mitotracker Orange), NP‐EGTA (o‐nitrophenyl EGTA), NPE‐ATP (P(3)‐[1‐(2‐nitrophenyl)]ethyl ester of ATP), and Fluo‐4 AM were from Molecular Probes (Life Technologies, Carlsbad, CA). For immunocyto‐ and histochemical staining, the following primary antibodies were used: rabbit anti‐Kir4.1 (1:200; Sigma‐Aldrich), mouse anti‐glial fibrillary acidic protein (GFAP; 1:200; G‐A‐5 clone, Sigma‐Aldrich), goat anti‐calretinin (1:500, Swant, Marly, Switzerland), mouse anti‐calbindin (1:400, Swant), rabbit anti‐PKCα (1:300, Santa Cruz Biotechnology, Heidelberg, Germany), rabbit anti‐cellular retinaldehyde‐binding protein (CRALBP; 1:300, Santa Cruz), rabbit‐anti‐Iba1 (1:500, Wako Chemicals, Neuss, Germany), and mouse anti‐glutamine synthetase (1:1000, Merck Millipore, Darmstadt, Germany). As secondary antibodies, we used Cy5‐conjugated donkey anti‐goat, Cy3‐conjugated donkey anti‐rabbit, Cy2‐conjugated donkey anti‐mouse, Cy3‐conjugated goat anti‐rabbit, and Cy2‐conjugated goat anti‐mouse. All secondary antibodies were obtained from Dianova (Hamburg, Germany) and applied at 1:200 dilution. Apoptosis was detected by the in situ cell death detection kit (Roche, Mannheim, Germany).
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3

Immunohistochemical Characterization of Brain Cells

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Papain was purchased from Roche Molecular Biochemicals (Mannheim, Germany). All other substances were from Sigma-Aldrich (Taufkirchen, Germany), unless stated otherwise. The following primary antibodies were used: rabbit anti-Kir4.1 (1:200; Sigma-Aldrich), mouse anti-GFAP (1:200; G-A-5 clone, Sigma-Aldrich), goat anti-calretinin (1:500, Swant, Marly, Switzerland), and mouse anti-calbindin (1:400, Swant). The following secondary antibodies were used: Cy5-conjugated donkey anti-goat, Cy3-conjugated donkey anti-rabbit, Cy2-conjugated donkey anti-mouse, Cy3-conjugated goat anti-rabbit, and Cy2-conjugated goat anti-mouse. All secondary antibodies were applied in a 1:200 dilution and were obtained from Dianova (Hamburg, Germany). For detection of the cell death rate the in situ cell death detection kit, tetramethyl-rhodamine (TMR) red, was applied (Roche Applied Science, Mannheim, Germany).
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4

Characterization of Syntaxin Antibodies for Cellular Localization

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A mouse monoclonal antibody against syntaxin 1 (clone HPC-1, syntaxin 1 ab1; used at 1:100 for EM), a rabbit polyclonal antibody against syntaxin 4 (syntaxin 4 ab1, raised against aa 2-23 of rat; used at 1: 50 for Western and 1:100 for EM) and a mouse monoclonal antibody against GFAP (clone G-A-5; used at 1:10,000 for Western) were from Sigma (Saint Louis, MU). Mouse monoclonal antibodies against syntaxin 1 (clone 78.2, syntaxin 1 ab2; used at 1:100 for EM), syntaxin 1A (clone 78.3; a subfamily of syntaxin 1; used at 1:250 for Western and 1:100 for EM), and rabbit polyclonal antibodies against syntaxin 3 (raised against aa 1-260 of rat, affinity purified, this bleed is no longer available) and syntaxin 4 (syntaxin 4 ab2, raised against aa 1-273 of rat, affinity purified; used at 1: 80 for Western and 1:100 for EM) were from Synaptic Systems (Göttingen, Germany). mouse monoclonal antibody against alpha CaMKII (clone 6G9; used at 1:125 for Western) is from Cayman Chemical (Ann Arbor, MI). The specificity of the primary antibodies was also tested by confirming that the three different syntaxin 1 antibodies and the two different syntaxin 4 antibodies produced consistent labeling patterns.
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5

Immunofluorescence and Immunoblotting of Brain Tissue

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The following antibodies were used for immunofluorescence on brain sections and immunoblots: Glial Fibrillary Acidic Protein (GFAP) (1:500; mouse monoclonal; clone G‐A‐5, G3893, Sigma‐Aldrich); CD68 (1:500; rat monoclonal; clone FA‐11 (MCA1957, AbD Serotec), Calbindin D‐28 K (1:1000, mouse monoclonal; CB‐955, ascites fluid; Sigma‐Aldrich), Myelin Basic Protein (MBP) (1:1000; rabbit polyclonal; GTX22404, GeneTex), LAMP1 (1:500; rat monoclonal; clone 1D4B, Developmental Studies Hybridoma Bank (University of Iowa, Iowa City, IA, USA) and p62/SQSTM1 (rabbit polyclonal, BML‐PW9860; Enzo). Fluorophore‐conjugated secondary antibodies against the corresponding primary antibody species (AlexaFluor 488, AlexaFluor 594 and AlexaFluor 647) were purchased from Invitrogen/Molecular Probes and were diluted 1:500. Analytical grade chemicals were purchased, if not stated otherwise, from Sigma‐Aldrich (MO, USA).
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6

Immunoblotting Protocol for Protein Analysis

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Immunoblotting was performed under standard conditions using 4-20% precast SDS gels (Bio-Rad) and PVDF membranes (Merck, Darmstadt, Germany). After incubation with primary antibodies overnight [cathepsin D: 1:500 (Claussen et al., 1997 (link)); Lamp1 (clone 1D4B): 1:250 Developmental Studies Hybridoma Bank (University of Iowa, IA, USA), GAPDH: 1:250 (sc-25778, lot #H0612, Santa Cruz Biotechnology, Dallas, TX, USA); Hsp70: 1:1000 (Synaptic systems, cat. no. 149011, kind gift from Prof. Dr Fischer von Mollard, Biochemistry III, Bielefeld University, Bielefeld, Germany); GFAP-glial fibrillary acidic protein (1:2000; clone G-A-5, G3893, Sigma)] and washing, membranes were incubated for 1 h with the appropriate secondary antibody conjugated to horseradish peroxidase (1:5000, Invitrogen, Carlsbad, CA, USA).
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7

Immunohistochemical Characterization of Hippocampal Glia

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Immunohistochemistry was carried out on free-floating sections for dorsal and ventral hippocampus under moderate shaking. All washes and incubations were done in 0.1 M phosphate buffer pH 7.4, containing 0.3% bovine serum albumin and 0.3% Triton X-100. The endogenous peroxidase activity was quenched for 10 min at room temperature in a solution of 3% hydrogen peroxide in 30% methanol. After several washes in buffer, sections were incubated overnight at 4 °C with a monoclonal antibody for ionized calcium-binding adapter molecule 1 (Iba1) (diluted 1:2000), a marker of microglia, or a monoclonal antibody for glial fibril acid protein (GFAP) (diluted 1:1000; Clone GA5, Sigma-Aldrich), a marker of astrocytes. Sections were then rinsed in buffer and incubated for 2 h at room temperature with biotinylated goat anti-mouse immunoglobulin G (diluted 1:300; Pierce). After several washes in buffer, sections were incubated for 90 min at room temperature with avidin-biotin-peroxidase complex (diluted 1:250; ImmunoPure ABC peroxidase staining kit). The reaction product was revealed by incubating the sections with 2 mg/mL 3,3-diaminobenzidine (Sigma-Aldrich) and 0.01% hydrogen peroxide in 0.1 M phosphate buffer. Then, sections were dehydrated, mounted on gelatinized slides, coverslipped, and examined with a Leica DMRB-E microscope.
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8

Dual Immunofluorescence for AQP4 and GFAP

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Sections were incubated overnight (18–21 hours) at 4°C with polyclonal rabbit anti-AQP4 (1:500, Santa Cruz Biotechnology, Inc Dallas, TX, USA) and monoclonal mouse anti-glial fibrillary acidic protein (GFAP) clone GA5 (1:1000, Millipore, Burlington, MA, USA) in 0.25% BSA, 0.25% Triton X-100 in PBS (antibody dilution buffer). Sections were washed three times in PBS and further treated with Alexa Fluor 488 goat anti-rabbit IgG and Alexa Fluor 568 goat anti-mouse IgG (1:1000, Invitrogen). Cell nuclei were counterstained with DAPI (Invitrogen) and sections were mounted and coverslipped with Vectashield Hard-Set Mounting Medium (Vector Laboratories, Burlingame, CA, USA). Images were captured with a BZ-X700 inverted fluorescence microscope (Keyence Corp.) at 20× magnification spanning the entire section. Quantification of the staining is described in Section 2.7.
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9

Dual Immunofluorescence for AQP4 and GFAP

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Sections were incubated overnight (18–21 hours) at 4°C with polyclonal rabbit anti-AQP4 (1:500, Santa Cruz Biotechnology, Inc Dallas, TX, USA) and monoclonal mouse anti-glial fibrillary acidic protein (GFAP) clone GA5 (1:1000, Millipore, Burlington, MA, USA) in 0.25% BSA, 0.25% Triton X-100 in PBS (antibody dilution buffer). Sections were washed three times in PBS and further treated with Alexa Fluor 488 goat anti-rabbit IgG and Alexa Fluor 568 goat anti-mouse IgG (1:1000, Invitrogen). Cell nuclei were counterstained with DAPI (Invitrogen) and sections were mounted and coverslipped with Vectashield Hard-Set Mounting Medium (Vector Laboratories, Burlingame, CA, USA). Images were captured with a BZ-X700 inverted fluorescence microscope (Keyence Corp.) at 20× magnification spanning the entire section. Quantification of the staining is described in Section 2.7.
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