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3 protocols using to pro 3 iodide

1

Antibody Detection and Quantification

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Propidium iodide and TO-PRO®-3 iodide were purchased from Sigma-Aldrich® (St. Louis, MO) and Life Technologies™ Europe B.V. (Bleiswijk, Netherlands), respectively. Fluorescein isothiocyanate (FITC)-conjugated mouse monoclonal secondary antibody anti-human IgG1-Fc (Ab50473), rabbit polyclonal anti-HER 2 (ab2428), anti-pHER-2 (ab47263), anti-ACTIN (ab1801) antibodies and horseradish peroxidase (HRP)-conjugated goat polyclonal secondary anti-Rabbit IgG Fc (ab97200) were obtained from Abcam® (Cambridge, UK). FITC-conjugated human IgG1 isotype control (ANC-295-040) and human IgG1 isotype control (ANC-295-010) were purchased from Adipogen® International (Liestal, Switzerland).
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2

Multiparametric T Cell Immunophenotyping

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Mouse T cells were labeled for 20min at 4°C with anti-CD3 (17A2), anti-CD4 (GK1.5), anti-CD8 (53–6.7), anti-CD45.1 (A20), anti-CD45.2 (104), anti-Vβ5.1–5.2 (MR9–4), anti-CD44 (IM7), anti-CD62L (MEL-14), anti-CD127 (A7R34), KLRG1 (MAFA), anti-IFN-γ (XMG1.2) and anti-TNF-α (MP6-XT22) (all eBioscience). Human T cells were labeled with anti-CD3 (UCHT1, Beckman Coulter), anti-CD4 (SK3, BD Biosciences), anti-CD8 (SK1, BD Biosciences). Dead cells were excluded with 1ng/ml TO-PRO-3 iodide (Sigma-Aldrich), or Near-IR (L10119, Life Technology). Intracellular cytokine staining was performed with the cytofix/cytoperm kit (BD Biosciences). Flow cytometry analysis was performed on LSR-II and LSR Fortessa (BD Biosciences). Data were analyzed with FlowJo software (Tree Star, version 7.6.5 and version 10). Representative flow cytometry gating strategies are found in Fig S9.
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3

Antimicrobial Peptide Screening Assay

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Four colonies of B. cereus (ATCC 10876), E. coli (ATCC 25922), and S. aureus (ATCC 6538) were inoculated into 5 mL LB broth and incubated at 37°C for 5 h. Cells suspensions were centrifuged at 3000 × g and 25°C, washed and resuspended in phosphate buffered saline (PBS) + (0.14 M NaCl, 2.7 mM KCl, 10 mM Na2HPO4, and 1.8 mM KH2PO4 supplemented with 10 mM glucose and 0.5 mM MgCl2; pH 7.4) to an OD600 of 0.1. Concurrently, a blank PBS+ sample without cells and cells treated with Nisin (Sigma Aldrich) and vancomycin (Sigma Aldrich) were used as controls (36 (link)). TO-PRO-3 iodide (Sigma Aldrich) and DiOC2(3) (Sigma Aldrich) dyes were then added into the sample and controls to a final concentration of 625 nM and 10 μM, respectively. The plates were incubated at 25°C in the dark for 5 min, and the cells were then treated with ModoCath peptides to final concentrations of 0.1×, 0.2×, and 1× MIC, respectively. Thereafter, the absorbance spectra for TO-PRO-3 iodide and DiOC2 were determined (Supplementary Figure S1). The absorbance of the plates was read at λex 640 nm and λem 700 nm for TO-PRO-3 iodide and λex 480 nm and λem 530 nm for DiOC2(3) using a fluorescence microplate reader (Gemini EM, Molecular Devices, Sunnyvale, CA, United States), where λex and λem indicate wavelengths for excitation (λex) and emission, respectively.
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