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2 protocols using dr5000 uv vis spectrophotometer

1

Detailed Cell Culture and Analysis Protocol

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RPMI-1640 medium and fetal bovine serum were provided by GIBCO, Inc. (item numbers: 31800002, 10099141). TRIzol reagent was from Invitrogen (Carlsbad, CA, United States), 0.25% trypsin from GIBCO, PBS buffer from Nanjing SenBeiJia Biological Technology Co., Ltd. Dimethyl sulfoxide (DMSO) was provided by Sigma, PVDF membrane by Millipore, DR5000 UV-Vis spectrophotometer by BioRad (Hercules, CA, United States), real-time PCR instrument by ABI (item number: 7500; Foster City, CA, United States). SYBR Premix Ex TaqTM was manufactured by Takara (Shiga, Japan). RIPA buffer was from Shanghai Haling Biological Technology Co. Ltd. (Shanghai, China). BCA Protein Assay Kit was provided by Shanghai Yubo Biological Technology Co. Ltd.. Flow cytometry was from Beckman (Brea, CA, United States), Annexin V-FITC Apoptosis Kit from BestBio. Primary antibodies including casepase-3, Bax, Bcl-2, and β-action were provided by Santa Cruz Biotechnology (Dallas, TX, United States). Vimentin, E-cadherin, N-cadherin, and horseradish peroxidase (HRP)-labeled goat anti-mouse secondary antibody were manufactured by Abcam (Cambridge, United Kingdom). MTT kit was provided by Beijing Baiao Laibo Technology Co. Ltd. ECL luminescence kit and MultiskanTM GO full-wavelength microplate reader by Thermo Fisher Scientific China Co. Ltd. (Shanghai, China).
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2

Quantification of BACE1 and miR-29c-3p

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We extracted the total RNA with the Trizol reagent (Thermo Fisher Scientific, Inc. Waltham, MA, USA) and measured its purity and concentration with a DR5000 UV-Vis spectrophotometer (BioRad, Hercules, CA, USA). We used the TaqMan miRNA reverse transcription kit (Thermo Fisher Scientific, Inc. Waltham, MA, USA) to perform the reverse transcription of RNA into cDNA. Reverse transcription and PCR amplification and quantification of RNA were performed on SYBR Premix Ex Taq™ (Takara, Shiga, Japan) and the PCR instrument produced by Applied Biosystems (item number: 7500). The design and synthesis of primers were completed by Sangon Biotech (Shanghai) Co., Ltd. BACE1: sense primer, 5′-CACTCTGTTCTGGGTGGTCC-3′; antisense primer, 5′-CATGGGGGATGCTTACCAGG-3′. Internal reference (GAPDH): sense primer, 5′-CGGATTTGGTCGTATTGGG-3′; antisense primer, 5′-CTGGAAGATGGTGATGGGATT-3′. MiR-29c-3p: sense primer, 5′-GAAGCACCATTTGAAATCAG-3′ and antisense primer, 5′-TTGGCACTAGCACATT-3′. Internal reference (U6): sense primer, 5′-CTTCACGAATTTGCGTGTCAT and antisense primer, 5′-GCTTCGGCAGCACATATAC-3′. PCR conditions: predenaturation at 95°C for 10 min, then denaturation at 95°C for 15 s, and annealing and extension at 60°C for 60 s. The results were calculated using 2−∆∆ct.
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