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30 protocols using axiocam 702

1

Mitochondrial Dynamics and Body Length

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For the mitochondrial morphology assay, WT D1 mothers were treated with 5 μM rotenone (TargetMol, T-2970) and 2 μM CNB dye for 12 h. Offspring were collected for imaging at the embryonic, L2 and L4 stages on rotenone and CNB-free plates. The images of hypodermal mitochondria of L2s were taken with an Axiocam 702 mono camera on a Zeiss LSM800 (Airyscan) confocal microscope using a 63× oil objective. For body length measurement, WT D1 mothers were treated with 5 μM rotenone or 50 mM metformin (Sigma, PHR1084) for 12 h, and embryos were produced on rotenone and metformin-free NGM plates. The maximal adult body lengths of tested animals were measured and quantified.
For the mitochondrial recovery assay, WT OD5 animals were treated with 0.5 mM or 1 mM AICAR (Selleck, S1802) mixed with 2 μM CNB dye from embryos to the L2 stage. The images of hypodermal mitochondria of L2s were taken with an Axiocam 702 mono camera on a Zeiss LSM800 (Airyscan) confocal microscope using a 63× oil objective. For the body length assay, WT OD2 animals were treated with 1 mM AICAR from the embryonic to young adult stages (egg laying start) and then transferred to AICAR-free plates. The maximal adult body lengths of tested animals were measured and quantified.
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2

Fluorescence Microscopy Imaging Protocol

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Imaging experiments were performed at 37°C in 0.5 mM or 1 mM Ca2+ Ringer's buffer (as indicated in the figure legends) using either a Zeiss Cell Observer Z1 microscope equipped with a 40× oil “Fluar” (N.A.: 1.3) objective, multi‐filter system, fast acquisition EMCCD camera (Evolve® 512 Delta) and LED system (Colibri, Zeiss) or a Zeiss Observer D1 equipped with a 40X oil Neofluar (N.A.: 1.3) objective, Axiocam 702 mono and LED system (Colibri, Zeiss) or a Zeiss Axio Observer 7 equipped with 40× oil “Neofluar” (N.A.: 1.3), Axiocam 702 mono and LED system (Colibri 7, Zeiss). Subsequent obtained data were processed with the AxioVision, Zen 2.6, or Zen 3.2 softwares (Zeiss, Oberkochen, Germany). All plasmids and constructs used are listed in Table EV2.
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3

Quantifying p16 Transfection in PANC1 Cells

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PANC1 cells cultured on 25 mm coverslips in 35 mm culture dishes were transfected for 48 h with WT or L16R p16 in the pCMV-FLAG vector. Cells were then fixed in 3.2% formaldehyde for 40 min and permeabilized in 0.1% Triton-X-100 at 4 °C for 5 min. Subsequent steps were performed at room temperature. Samples were blocked for 1 h in blocking buffer (BB; 5% goat serum, 5% glycerol, 0.05% NaN3 in PBS), incubated for 2 h in M2 anti-FLAG antibody diluted 1/200 in BB, washed three times in PBS, and then incubated for 1 h with ALEXAfluor-594 goat anti-mouse secondary antibody (Thermo) at 1:200 in BB. After staining, these were washed three times in PBC, and then samples were mounted on microscope slides in Prolong with DAPI (Thermo). Microscopy was performed using a Zeiss system including an Axiovert 200 microscope with a 20× Plan-APO Chromat lens and an Axiocam 702 mono camera. Images were captured using the Zen 2.3 application. Image fields were taken randomly in red (AF546; immunofluorescence) and blue (DAPI) channels, using only the blue signal for focusing. For each coverslip, 14 fields were acquired. DAPI and immunofluorescent images were overlaid and quantified using Adobe Photoshop CC 19.1.4. A minimum of 790 total cells were counted per coverslip. Results were expressed as percent transfection [100 × number of red (p16-positive) cells/total blue nuclei].
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4

C. elegans Mitochondrial Membrane Potential

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C. elegans were cultured overnight in the dark at 20 °C on NGM plates containing 2 μM cationic Nile blue (CNB) before producing OD2 or OD5 offspring. The oocytes were collected by dissecting the mother worms in M9 buffer, and embryos were obtained by bleaching the overnight-stained worms. CNB-stained L2 and L4 worms were generated by egg laying for 1 h on NGM plates containing 2 μM CNB in the dark at 20 °C. L2 (28 h post egg laying) and L4 (52 h post egg laying) animals were collected for mitochondrial morphology analysis.
TMRE (Thermo Fisher, T669), a mitochondrial membrane potential sensor, was used to evaluate mitochondrial membrane potential in this study. Mothers treated with 2 μM TMRE were used to compare the mitochondrial membrane potential of the germline. Mothers and offspring treated with 5 μM TMRE were used to compare membrane potential between OD2 and OD5. Fluorescence images were taken using an Axiocam 702 mono camera on a Zeiss LSM800 (Airyscan) confocal microscope with a 63× oil objective.
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5

DiI Staining of C. elegans Neurons

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Three-day-old adult offspring were washed with M9 buffer three times before being stained with 30 µg/mL DiI (1,1′-dioctadecyl-3,3,3′,3′-tetramethylindocarbocyanine perchlorate, US EVERBRIGHT, D4010) for ~3 h on a stir plate with continuous shaking at 350 rpm at room temperature. Animals were transferred to a new NGM plate after three washes with M9 buffer. Images were taken with an Axiocam 702 mono camera on a Zeiss LSM800 (Airyscan) confocal microscope using a 63× oil objective.
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6

Astrocytic Calcium Imaging Protocol

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Ca++ events were observed in GCaMP6f expressing astrocytic networks using a customised AxioPhot (Carl Zeiss) upright epifluorescence microscope (40× W N-Achroplan 40×/0.75 M27 objective) equipped with the Axiocam 702 mono sCMOS camera for live cell imaging and the Colibri 5 light source. In a subset of experiments, wild-type astrocytes were loaded with 2 μM Fluo-3 calcium sensor (Fluo-3 AM, F1241, ThermoFisher) in PBS + 1% Pluronic F-127 for 30 min at 37°C. For each sample, 3 areas (560 × 356 μm) were recorded for 3 min at the rate of 5 frames (960 × 608 pixels, 0.586 μm pixel size) per second using the Zen Blue software (Carl Zeiss).
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7

Imaging and Electrical Stimulation of Myenteric Ganglia

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Ringed preparations were imaged with a resolution of 512 x 512 pixels using a Plan-Apochromat 20x/1,0 DIC (UV) VIS-IR M27 water dipping objective, with a numerical aperture of 1 and a 1x software zoom on an upright Zeiss (Axio Examiner Z.1) microscope. Using a (Axiocam 702) camera (Carl Zeiss Microscopy, North Ryde, NSW, Australia), images (16 bit) were acquired at 7 Hz.
Myenteric ganglia were electrically stimulated with a single pulse and a train of pulses (20 pulses, 20 Hz; Master-8 pulse stimulator [A.M.P.I, Israel], connected to a stimulation isolation unit ISO-Flex, [A.M.P.I, Israel]) using a focal stimulating electrode (tungsten wire; 50 μm) placed on an inter-ganglionic fibre tract entering the chosen ganglion.
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8

Fluorescence Microscopy Imaging of Live Cells

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Live cells were imaged for fluorescence microscopy using a Zeiss Imager Z2 microscope (Carl Zeiss, Thorn-wood, NY) with a Zeiss Axiocam 702 mono digital camera. To acquire images, ZEN 3.0 (Blue edition) software was used. To prepare figures, Adobe Photoshop and Illustrator were used.
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9

Widefield Fluorescence Microscopy Imaging

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Widefield fluorescence microscopy was performed on an AxioOberver microscope (Zeiss) equipped with a HXP lamp or LED illumination (Colibri) (Zeiss), an AxioCam 702 mono camera (Zeiss), and a Plan-Apochromat 20×/0.8 objective (Zeiss). Images and image stacks were acquired in ZEN 2.3 software (Zeiss). Quality control experiments using cultured neurons were done using a 63×/1.4 N.A. objective. Where indicated, an ApoTome.2 grid (Zeiss) was inserted into the optical path to produce SIOS images. In ApoTome imaging, an optical grid is tilted back and forth in the light path and projected onto the specimen. At least three raw images of the specimen were acquired at different positions of the grid. The software used the grid-projected images to calculate and remove the out-of-focus light and combined the 3 images into 1. In case of HXP lamp illumination, the light intensity was set to 100% to minimize exposure times. In experiments with LED illumination the light intensity was varied along with the exposure time to minimize photobleaching of the tissue sample.
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10

Multi-channel Fluorescence Microscopy Imaging

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Images were acquired at LiMiF (Université Libre de Bruxelles, Faculté de Médecine, Bruxelles, Belgique), on an Axio Observer Z1 inverted microscope (Zeiss) equipped with a Zeiss Axiocam 702 mono camera using a EC Plan NeoFluar ×10/0.3 dry objective (Zeiss). The microscope is equipped with an HBO 100 light source. Three channels were recorded with narrow band-pass filter sets (Zeiss) #49 (ex. 335–383 nm, em. 420–470 nm), #43 (ex. 538–562 nm, em. 570–640 nm), and #50 (ex. 625–655 nm, em. 665–715 nm) used to visualize blue, red and far-red fluorochromes, respectively. Images of 2.3 pixels (Axiocam 702 m) were acquired and recorded as 16-bit czi files. The field of view is defined by the ×10 objective resulting in 1.13 mm by 712.58 micron images. The pixel scaling results in 0.586 micron by 0.586 micron. Settings were kept identical for all conditions. Single plane images were displayed using Zen (Blue Edition) software (Zeiss) and exported as uncompressed TIF images.
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