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14 protocols using ab10214

1

Immunostaining and Flow Cytometry of Cardiac Cells

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Cells were fixed 14 days after transduction in 2% PFA, permeabilized with 0.2% Triton, and blocked with donkey serum (Sigma). Cells were then stained overnight at 4°C with different primary antibodies. Antibody dilutions were the following: anti-Vimentin (Sigma; V6630) 1 : 200, anti-Ki67 (sigma; ab15580) 1 : 200; anti-GFP (Abcam; ab545) 1 : 500; anti-sarcomeric α-actinin (αSA; Abcam; ab9465) 1 : 200; anti-connexin 43 (Santa Cruz; sc-9059) 1 : 300; MyHC (MF20; Hybridoma) 1 : 3; cardiac troponin T (Abcam; ab10214) 1 : 200.
Secondary fluorescents antibodies (Alexa-Fluor; 1 : 500) were used for detection. Nuclei were stained with Hoechst 33342 (Sigma).
Flow cytometry analyses were performed according to standard procedures with the following antibodies: anti-CD90/Thy1 antibody (FITC) (Abcam; ab124527); anti-cardiac troponin T (Abcam; ab10214).
Cardiac troponin T expression was analyzed by intracellular staining; cells were fixed with 2% PFA, blocked with donkey serum (Sigma), and permeabilized by fixation/permeabilization (BD Cytofix/Cytoperm).
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2

Cardiomyocyte Proliferation Quantification

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Primary cardiomyocytes isolated from day 14 neonatal rats were stained for analysis by flow cytometry. Cells were washed in staining buffer (PBS + 5% FBS), spun down, and re-suspended in 4% paraformaldehyde for 20 minutes at room temperature in the dark. The fixed cells were then washed in permeabilization wash buffer (eBioscience) and supernatant discarded. Cells were stained with antibodies for the cardiomyocyte marker, Troponin T (ab10214, Abcam) (1:200), and proliferation marker, Ki-67-conjugated to allophycocyanin (APC) (eBioscience) (50–5698, 1:200). After incubation and washing, cells were incubated with the secondary antibody for Troponin T, fluorescein isothiocyanate (FITC) (555988, BD Pharmingen) (1:100). Finally cells were washed and resuspended in 1% paraformaldehyde to be run on a FACSAria (BD Biosciences) and analyzed via FACSDiva software (BD Biosciences) for percentage of Ki-67 expressing cardiomyocytes.
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3

Differentiation and Transfection of Cardiomyocytes and Vascular Smooth Muscle Cells

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Immunofluorescent staining of troponin (Abcam ab10214), and video documentation of beating cardiomyocytes validated successful CM differentiation (Video S1). Transfections of 21 days differentiated CMs were performed with 2x106 cells and 10 μg of the MPRA plasmid pool (split in two wells of a 6-well plate) and Lipofectamine Stem Transfection Reagent (STEM00015, ThermoFisher) for 48 h. Transfections with GFP served to evaluate transfection efficiencies on an EVOS M5000 epifluorescence microscope (ThermoFisher, Figure S1).
Successful VSMC differentiation of hTERT-immortalized adipose derived primary human mesenchymal stem cells (MSCs, SCRC4000, ATCC) was validated by quantification of smooth muscle markers (transgelin [TAGLN], calponin-1 [CNN1], and smooth muscle actin [ACTA2]) using qRT-PCR with PowerUp (ABI) (Figure S1, Table S24).124 (link) CTs were normalized to GAPDH as a housekeeper. 19-20 days differentiated VSMCs (1.1x106 cells / 10 cm dish) were transfected with 12 μg MPRA oligo pool and 12 μl GeneXPlus (1:1 ratio, ACS-4004, ATCC) for 48 h. Transfection efficiency was evaluated as described for CMs (Figure S1). Lower transfection efficiencies and thus lower barcode recovery rates were observed in VSMCs, consequently impacting our statistical power to detect regulatory variants in this cell type.
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4

Cardiomyocyte Proliferation Quantification

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For culture, isolated cardiac cells were seeded at a density of 20,000 cells/mL on a 20 μg/mL laminin-pretreated support (Sigma), and cultivated in DMEM/F-12 supplemented with 10% FBS, 1 U/mL Na-Penicillin G, and 0.5 U/mL streptomycin (Gibco, Shanghai, China). In order to inhibit fibroblast proliferation, cultures were performed with 5 μg/ml cytosine □-D-arabinofuranoside (Ara C). Cells were incubated at 37 °C in a humidified, 5% CO2–enriched atmosphere. These cells were cultured for four days. To visualize the proliferation of isolated cardiomyocytes, we fixed the cells in 4% paraformaldehyde for ten minutes. After washing, cells were permeabilized with 5% Triton-100 for 15 minutes. The cells were incubated with mouse monoclonal antibody against cardiac troponin T (Abcam, ab10214, 1:200 dilution) and rabbit anti–Ki67 antibody (Abcam, ab15580, 1:200 dilution) at 37 °C for two hours. After washing, cells were incubated with Alexa Fluor 555–conjugated anti–mouse second antibody (Abcam, ab150107, 1:1000 dilution) and Alexa Fluor 488–conjugated anti–rabbit second antibody (Abcam, ab150073, 1:1000 dilution) for 30 minutes. Nuclei were stained with DAPI. For quantification, ten different field pictures were taken from each well, and analyzed using Image J.
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5

Immunocytochemistry of hPSC-derived Cardiomyocytes

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hPSC-derived cardiomyocytes were seeded on Matrigel-coated 20 mm coverslips in 12-well plates. Cells were washed with 1× PBS and fixed with 4% formaldehyde in PBS at room temperature for 10 min. The coverslips were washed and blocked with blocking buffer (1× PBS + 0.3% TritonX + 3% goat serum) at room temperature for 30 min. For staining, the following antibodies and concentration were used: anti-cTnT (ab10214, Abcam) 1:400, anti-SAA (ab9465, Abcam) 1:200, anti-Mlc2a (311 011, Synaptic Systems) 1:200 or anti-γ H2AX phosphoS139 (ab2893, Abcam). Antibodies were diluted in 1× PBS + 0.3% TritonX + 2% goat serum and incubated at 4 °C overnight. The cells were then washed three times for 5 min and stained with secondary antibodies (Alexa Fluor® 488 or 647, Invitrogen) at a dilution of 1:200. The cells were stained with DAPI for 10 min in 1× PBS and after two more washes mounted onto microscope slides using ProLong® Gold Antifade Mountant (Life Technologies).
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6

Immunohistochemical Analysis of Cardiac Cells

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Cells were fixed in 4% PFA at room temperature for 30 min and washed with PBS twice. After permeabilizing with 0.3% Triton X-100 for 20 min, the cells was treated with 5% BSA for 1-2 h, then incubated with various primary antibodies at 4 °C overnight. After thorough washing, secondary antibodies conjugated with Alexa Fluor 555 or Alexa Fluor 488 were used. Nuclei were visualized with Hochest 33342 (10 μg/ml). Images were captured with an Olympus IX71 inverted fluorescent microscope. Antibodies used in this study are as following: cTNT (ab10214, Abcam), GATA4 (MABE477, Millipore and SC-25310 Santa Cruz), NKX2.5 (8792, CST & Ab35842, Abcam), cTNI (ab47003, Abcam), α-actinin (A7811, Sigma), Mef2c (5030S, CST), α-MHC (ab15, Abcam), Sca-1 (17-5981-81, eBioscience), α-SMA (A2547, Sigma), PECAM (SC-1506, Santa Cruz), Cnn2 (SC-16607, Santa Cruz), VE-cadherin (SC-9989, Santa Cruz), MLC2v (ab79935, Abcam), MLC2a (311011, Synaptic systems), and HCN4 (Ab69054, Abcam).
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7

Quantifying Cardiac Troponin Proteins

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Whole tissue lysates were prepared to determine troponin protein levels. Therefore, pulverized frozen tissue was homogenized in 40 μl/mg tissue 1× reducing sample buffer (106 mM Tris-HCl, 141 mM Tris-base, 2% lithium dodecyl sulfate (LDS), 10% glycerol, 0.51 mM EDTA, 0.22 mM SERVA Blue G250, 0.18 mM Phenol Red, 100 mM DTT) using a glass tissue grinder. Proteins were denatured by heating to 99 °C for 5 min and debris was removed by centrifugation at maximum speed for 10 min in a microcentrifuge (Sigma, 1–15 K).
For analysis of troponin protein levels by Western blot, 5 μg of protein were separated on a 4–15% TGX gradient-gel (Biorad) and transferred to a polyvinylidene difluoride membrane. Site-specific antibodies directed to cTnT (ab10214, Abcam), cTnT (T6277, Sigma-Aldrich), cTnT (ab8295, Abcam), cTnI (ab10231, Abcam), cardiac Troponin C (cTnC, sc48347, Santa Cruz) and α-actinin (A7811, Sigma-Aldrich) were used to detect the proteins which were visualized with an enhanced chemiluminescence detection kit (Amersham) and scanned with Amersham Imager 600. Protein levels were determined by densitometric analysis. Protein levels were normalized to α-actinin or cTnI when appropriate.
Equal loading of troponin complexes was verified with Imperial protein stain (Thermo Scientific).
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8

Cardiomyocyte Identification by Flow Cytometry

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Cells were harvested and rinsed three times with cold PBS and then fixed with 0.5% paraformaldehyde (PFA) for 20 min and permeabilized with 0.1% Triton X-100. Then, the cells were stained with anti-cTnT (1 : 500, ab10214, Abcam) followed by an Alexa Fluor 594 conjugated secondary antibody. cTnT positive cells were measured using a FACSCalibur flow cytometer (BD Bioscience, CA, USA).
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9

Immunofluorescence Analysis of Cell Markers

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Slides were deparaffinized and underwent heat antigen retrieval for 20 min in
Tris EDTA pH 9 antigen retrieval buffer. Samples were blocked for 2 h in 10%
goat serum and 1% bovine serum albumin (BSA) prior to incubation in primary
antibody overnight in 0.5% BSA. They were then incubated in secondary antibody
diluted in phosphate buffered saline prior to mounting with Vectashield
4',6-diamidino-2-phenylindole DAPI (Vector Laboratories, Burlingame, CA). Images
were then taken on the Nikon Eclipse Ti confocal microscope (Nikon USA,
Melville, NY). Cell staining was conducted on chamber slides. Cells were washed
in ice cold phosphate buffered saline PBS and fixed in 4% paraformaldehyde for
10 min prior to permeabilizing with 0.1% Triton X in PBS for 10 min. Cells were
blocked for 30 min in blocking buffer as above and incubated in primary antibody
in 0.5% BSA for 1 h, followed by secondary antibody for 1 h. Cell slides were
mounted in Vectashield DAPI and imaged as above. Antibodies used included: alpha
smooth muscle actin (Abcam, ab5694) 1:100, natriuretic peptide clearance
receptor C (NPRC) (Novus Biologics, 31365) 1:50, troponin-T (Abcam, ab10214)
1:100, and Alexa Fluor 488 or 594 conjugated secondary 1:500 goat anti-rabbit
IgG (Thermo Fisher Scientific).
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10

Quantifying Cardiac Troponin Proteins

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Whole tissue lysates were prepared to determine troponin protein levels. Therefore, pulverized frozen tissue was homogenized in 40 μl/mg tissue 1× reducing sample buffer (106 mM Tris-HCl, 141 mM Tris-base, 2% lithium dodecyl sulfate (LDS), 10% glycerol, 0.51 mM EDTA, 0.22 mM SERVA Blue G250, 0.18 mM Phenol Red, 100 mM DTT) using a glass tissue grinder. Proteins were denatured by heating to 99 °C for 5 min and debris was removed by centrifugation at maximum speed for 10 min in a microcentrifuge (Sigma, 1–15 K).
For analysis of troponin protein levels by Western blot, 5 μg of protein were separated on a 4–15% TGX gradient-gel (Biorad) and transferred to a polyvinylidene difluoride membrane. Site-specific antibodies directed to cTnT (ab10214, Abcam), cTnT (T6277, Sigma-Aldrich), cTnT (ab8295, Abcam), cTnI (ab10231, Abcam), cardiac Troponin C (cTnC, sc48347, Santa Cruz) and α-actinin (A7811, Sigma-Aldrich) were used to detect the proteins which were visualized with an enhanced chemiluminescence detection kit (Amersham) and scanned with Amersham Imager 600. Protein levels were determined by densitometric analysis. Protein levels were normalized to α-actinin or cTnI when appropriate.
Equal loading of troponin complexes was verified with Imperial protein stain (Thermo Scientific).
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