The largest database of trusted experimental protocols

Alexa 546 secondary antibody

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Alexa Fluor 546 secondary antibody is a fluorescent labeling reagent designed for use in immunohistochemistry, flow cytometry, and other fluorescence-based applications. It is a highly cross-adsorbed secondary antibody that can detect a wide range of primary antibodies raised in various host species. The Alexa Fluor 546 dye exhibits bright, photostable fluorescence with an excitation maximum at 556 nm and an emission maximum at 573 nm.

Automatically generated - may contain errors

10 protocols using alexa 546 secondary antibody

1

Immunofluorescence Staining of Muscle Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Harvested gastrocnemius or TA muscles were placed in molds containing OCT compound (VWR) and flash frozen in liquid nitrogen. 10 μm sections were cut onto pre-treated histological slides. Slides were fixed using 4% Paraformaldehyde. Dystrophin and nNOS were detected with rabbit polyclonal antibodies against the C-terminal domain of dystrophin (1:200, Abcam 15277) and N-terminal domain of nNOS (1:100, Immunostar 24431) respectively, followed by a donkey anti-rabbit Alexa 546 secondary antibody (1:400, Thermo Fisher).
+ Open protocol
+ Expand
2

Immunocytochemistry of Neuronal and Glial Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were fixed for 1h in 4% paraformaldehyde (PFA) in phosphate buffer (PB) 0.1 M at pH 7.3 and washed three times in PBS, followed by membrane permeabilization with 0.4% Triton X-100 diluted in PBS at 4 °C for 40 min. A 1% albumin in PBS at 4 °C for 40 min was used to block unspecific binding. After several washes with PBS, the cells were incubated overnight with primary antibodies, 1:500 βIII tubulin (TUJ1; ab78078, Abcam, Cambridge, UK)- a neuronal marker, and 1:500 glial fibrillary acidic protein (GFAP; G3893, Sigma Aldrich, St. Louis, MO, USA), a glial astrocytic marker, in a solution containing 5% normal donkey serum (D9663, Sigma Aldrich, St. Louis, MO, USA) and 0.3% Triton X-100 diluted in PB 0.1M at room temperature. After serial washes with PBS, the cells were incubated with 1:1000 Alexa 488 fluorescent secondary antibody (A11008, ThermoFisher Scientific, Waltham, MA, USA) diluted in 0.3% Triton X-100 on PB 0.1 M for 2 h at room temperature. The samples were counterstained with the nuclear marker 4′-6-diamino-2-phenylindole (DAPI). The same protocol was performed for double IF using 1:1000 Alexa 546 secondary antibody (A11018, ThermoFisher Scientific, Waltham, MA, USA). After washing, cells were imaged with Nikon TS100F inverted microscope (Nikon Instruments Inc., Melville, NY, USA).
+ Open protocol
+ Expand
3

Immunofluorescence Staining of Muscle Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Harvested gastrocnemius or TA muscles were placed in molds containing OCT compound (VWR) and flash frozen in liquid nitrogen. 10 μm sections were cut onto pre-treated histological slides. Slides were fixed using 4% Paraformaldehyde. Dystrophin and nNOS were detected with rabbit polyclonal antibodies against the C-terminal domain of dystrophin (1:200, Abcam 15277) and N-terminal domain of nNOS (1:100, Immunostar 24431) respectively, followed by a donkey anti-rabbit Alexa 546 secondary antibody (1:400, Thermo Fisher).
+ Open protocol
+ Expand
4

Comprehensive Immunohistochemistry Protocol for Tissue Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
In vitro and in vivo constructs were fixed with 1% (w/v) PFA for 2 h, followed by 25% (w/v) sucrose incubation for 12 h. Samples were then embedded in optimal cutting temperature (OCT) compound (CellPath, Newton, UK), frozen in freezing isopentane, and cryosectioned (12 μm thickness). Cryosections were incubated for 1 h in 0.3% w/v Triton X-100 and 2% v/v normal goat serum, or 5% v/v donkey serum in PBS (blocking buffer), and then for 1 h in the following primary antibodies: mouse anti-PECAM-1 (CD31, endothelial cells, 1:100, LubioScience Gmbh, Zürich, Switzerland), rabbit anti-Ki67 (proliferating cells, 1:100, Abcam, Cambridge, UK), rabbit anti-phospho-histone H3 (Ser28) (1:400, Cell Signaling Technology, Danvers, MA, USA) and rabbit anti-cleaved caspase3 (cells in apoptosis, 1:100, Cell Signaling, Technology Inc., Danvers, MA, USA), mouse monoclonal anti-Human Nuclei (HuNu) (clone 235-1, human cells, 1:100, Merck Millipore, Burlington, MA, USA), and goat anti-Ve-Cadherin (endothelial cells, 1:200, Santa Cruz Biotechnology, Dallas, TX, USA). Tissue sections were then incubated in the dark for 1 h in fluorescently labeled Alexa488 and Alexa546 secondary antibody (dilution 1:200, Thermo Fisher Scientific Inc., Waltham, MA, USA). Cell nuclei were stained with 4′,6-Diamidine-2′-phenylindole dihydrochloride (DAPI, 300nM, Thermo Fisher Scientific Inc., Waltham, MA, USA).
+ Open protocol
+ Expand
5

Cell Adhesion Assay for Nanoemulsions

Check if the same lab product or an alternative is used in the 5 most similar protocols
To determine whether the nanoemulsions could interfere with cellular adhesion, we performed a cell adhesion test by immunocytochemistry, as described for morphological analysis. Briefly, the CESC, EuESC, and EctESC cultures in equal number (1 × 104 cells/well) were treated for 24 h, fixed, permeabilized, and incubated with anti-β-catenin primary antibody (1:100, Sigma-Aldrich) followed by Alexa 546 secondary antibody (1:300, Invitrogen). Then, the cells were incubated with DAPI, the coverslips mounted onto histological slides and photographed in a fluorescence microscope (Nikon, Tokyo, Japan). The images shown are representative of at least three separate experiments.
+ Open protocol
+ Expand
6

Tumor Cryosection Immunofluorescence Staining

Check if the same lab product or an alternative is used in the 5 most similar protocols
Animals were sacrificed by CO2 asphyxiation, tumors and organs were excised, cut in half and embedded in OCT, and immediately placed on dry ice. Samples were stored at −80 °C. Ten, 10 μm tumor cryosections were cut using a Cyrostar HM560 (Microm International, Waldorf, Germany), air-dried, and imaged for exogenous marker native fluorescence, mKate (visualized at 633 nm). Sections were fixed in 50% (v/v) acetone/methanol for 10 min at room temperature and subsequently stained for: (1) CD31 using a rat monoclonal anti-mouse CD31 antibody (BD Pharmingen) and Alexa 647 secondary antibody (Invitrogen), (2) Her2/neu using Herceptin, a monoclonal anti-human Her2/neu antibody (Genentech/Roche), followed by an Alexa 546 secondary antibody (Invitrogen), and (3) cell nuclei using Hoechst 33342, Bis-Benzimide (Sigma) (8 μg/mL at 37 °C), for 30 min.
+ Open protocol
+ Expand
7

Confocal Microscopy of Intracellular Nanoparticles

Check if the same lab product or an alternative is used in the 5 most similar protocols
For confocal microscopy, cells were grown overnight on poly-L-lysine coated coverslips. MEs were visualized by fluorescence microscopy using an ME-specific antibody to cell surface proteins [32 (link)], and an anti-rabbit Alexa 546 secondary antibody (Invitrogen). Molday particles come tagged with a Rhodamine B fluorescent marker by the manufacturer. Cells were also stained with DAPI and phalloidin (633 nm, Invitrogen) for improved intracellular localization of MEs or Molday particles. Confocal microscopy was performed on a Zeiss LSM710 Imager (Carl Zeiss Canada Ltd., Canada).
+ Open protocol
+ Expand
8

cFOS Immunohistochemistry and Peptide Biodistribution

Check if the same lab product or an alternative is used in the 5 most similar protocols
For cFOS analysis, mice were treated s.c. with a single dose of 150 nmol kg−1. Tissues were harvested 90 min following drug exposure. Fixed brains were coronally cryosectioned and 35-μm-thick slices were immunolabelled with the monoclonal rabbit anti-cFOS antibody (1:400, Invitrogen, no. MA5-15055) and the antirabbit Alexa546 secondary antibody (1:4,000, Invitrogen, no. A10040). According to the Allen mouse brain atlas, the ARC and the dorsomedial and ventromedial hypothalamic nuclei were captured at ×20 magnification using the Leica SP8 confocal microscope. In each region, the number of cFOS positive cells was counted in a blinded manner using Fiji/ImageJ software. For assessment of central nervous system drug appearance, mice (n = 3–4 each group) were treated with a single s.c. dose of the Cy5-labelled peptides (150 nmol kg−1). After 90 min, tissues were harvested and processed similar to the cFOS analysis.
+ Open protocol
+ Expand
9

Fluorescent Protein Targeting to Peroxisomes

Check if the same lab product or an alternative is used in the 5 most similar protocols
(7S, 9S)-7-[2R, 4S, 5S, 6S)-4-Amino-5-hydroxy-6-methyloxan-2-yl] oxy-6, 9, 11-trihydroxy-9-(2-hydroxyacetyl)-4-methoxy-8, 10-dihydro-7H-tetracene-5, 12-dione (doxorubicin) was from Selleckchem (#S1208). 2-hydroxypropyl-β-cyclodextrin (HPβCD) was from Cayman Chemical Company (#128446-35-5). Antibodies against ACAA1–3 ketoacyl-CoA thiolase were from Sigma (#HPA007244; 1:200). Alexa 546 secondary antibodies were from Life Technologies (#A11010; 1:200). pGW1-Hyper-per, tagged with a peroxisome targeting signal (PTS), was cloned from pHyper-cyto (Evrogen, #FP941). pGW1-GFP-per was cloned from pGW1-GFP. pGW1-Dendra2-per was cloned from pGW1-Dendra2, which was described (Moruno Manchon et al., 2015 (link); Tsvetkov et al., 2013 (link)). pGW1-Hyper-per, pGW1-GFP-per and pGW1-Dendra2-per contain the “per” motif. The “per” motif is the type 1 PTS, which is commonly used to target a fluorescent protein to peroxisomes (Goedhart et al., 2012 (link)). pTagBFP was from Evrogen (#FP172). pGW1-GFP was described (Arrasate and Finkbeiner, 2005 (link)). pGW1-mApple was described (Moruno-Manchon et al., 2017b (link)).
+ Open protocol
+ Expand
10

Immunocytochemical Analysis of HDAC3

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were fixed with 4% paraformaldehyde and a standard immunocytochemistry procedure was performed. Visualization of the primary anti-HDAC3 antibody (Imgenex, San Diego, CA, USA). was done with the Alexa 546 secondary antibodies (Life Technologies). Nucleus was visualized by Hoechst 33258 (Sigma Aldrich). Images were obtained using an Axioplan 2 fluorescent microscope and Axiocam HRc CCD camera system (Zeiss, Göttingen, Germany).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!