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13 protocols using ham s f 12 media

1

Guinea Pig Gastric Epithelial Cell Isolation

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Primary guinea pig gastric epithelial cells were obtained as previously described [54 (link)]. Briefly, the stomach was isolated from the guinea pig, homogenized and treated with 0.25% trypsin (BIOMED-LUBLIN, Lublin, Poland) for 15 min at room temperature. The cell suspension at a density of 2 × 106 cells/mL was seeded onto a 6-well plate (Becton Dickinson, Franklin Lakes, NY, USA) and cultured for 24 h (5% CO2, 37 °C) to allow the cells to adhere. The cells were cultured in a mixture of DMEM and Ham’s F-12 media (ratio 1:1; Sigma-Aldrich, Saint Louis, Mi, USA), supplemented with 10% fetal calf serum (FCS), 1% (N-2-hydroxyethylpiperazine-N-2-ethane sulfonicacid) (HEPES), penicillin (100 U/mL), streptomycin (100 µg/mL), amphotericin B (0.025 µg/mL), l-glutamine (2 mM/mL)epidermal growth factor (Sigma-Aldrich, Saint Louis, MI, USA) 0.01 µg/mL and 0.005% dexamethasone. The guinea pig fibroblasts (CRL-1405) were obtained from the American Type Culture Collection (ATCC, Rockville, Manassas, VA, USA) The cells were routinely grown as a monolayer in complete RPMI-1640 medium cRPMI(Sigma St. Louis, MI, United States) at 37 °C in a humidified atmosphere containing 5% CO2.Every 2–3 days, the medium was changed and the cells were passaged at 80–90% confluence.
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2

DRG Neuron Culture in Diabetic Conditions

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DRG neurons were isolated from adult male Sprague Dawley (300-350 g) rats, dissociated and cultured using previously described methods [33 (link)]. Briefly, neurons were cultured in glucose-free Hams F12 media supplemented with Bottenstein’s N2 without insulin (Sigma, St Louis, MO, USA). DRG neurons from control rats were cultured in the presence of 5 mM D-glucose and DRG neurons derived from STZ-induced diabetic rats with 25 mM D-glucose. No neurotrophins or insulin was added to any DRG cultures unless otherwise indicated. The HEK293 (ATCC CRL-1573, Virginia, USA) cell line was cultured in DMEM/F12 (1:1) media containing 10 mM glucose and 10% FBS. Sorbinil, a selective inhibitor of aldose reductase was purchased from a commercial supplier (Sigma, St Louis, MO, USA). For more details, see Supplementary Information.
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3

SHSY5Y Neuroblastoma Cell Culture

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The human neuroblastoma-derived cell line SHSY5Y (ATCC CRL-2266; ATCC, Gaithersburg, MD, USA), a popular albeit imperfect neuronal model, was cultured and expanded for experiments in 42% Ham’s F12 media (Sigma Aldrich), plus 42% EMEM media (Sigma Aldrich), 15% fetal bovine serum, 1% penicillin-streptomycin, and 1% non-essential amino acids, with enzymatic passaging using TrypLE Select (Thermo Fisher Scientific). SHSY5Y neural cells were plated onto 96-well culture plates at 25,000 cells/well and grown for 1–2 days before treatments were applied.
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4

Cell Culture Conditions for Prostate and Kidney Cell Lines

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Cell lines LNCaP, PC3, 22Rv1, RPWE-1 and HEK-293T were purchased from ATCC (ATCC, USA). LNCaP and 22Rv1 were maintained in RPMI media (Sigma-Aldrich, USA) supplemented with 10% FBS (Gibco, USA). PC3 was maintained in Ham’s F-12 media (Sigma-Aldrich, USA) supplemented with 10% FBS. RPWE-1 was grown in Keratinocyte Serum Free Medium (ATCC, USA) supplemented with bovine pituitary extract and human recombinant epidermal growth factor. HEK-293T was maintained in DMEM (Sigma-Aldrich, USA) supplemented with 10% FBS. All the cell lines were cultured in a humidified tissue culture chamber with 5% CO2 at 37°C.
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Culturing Human Gastric Adenocarcinoma Cells

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AGS cells (ATCC 1739, human gastric adenocarcinoma epithelial cell line) were grown in Ham’s F-12 media (Sigma-Aldrich) with 10% heat-inactivated FBS under a humidified atmosphere supplemented with 5% CO2 at 37 °C. To cultivate AGS cells for OMV treatment, 100 U/mL penicillin and 100 μg/mL streptomycin (Biological Industries) were also added to the medium. When AGS cells reached approximately 80% confluency, the medium was discarded and AGS cells were washed with PBS once and then subcultured to new 10 cm plates.
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Culturing Human Cell Lines for Research

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We cultured human embryonic kidney 293 cells and 4 human colorectal cancer cell lines (DLD-1, Caco-2, LoVo, and HT-29) in specific culture media. 293, Caco-2, and LoVo cells were obtained from RIKEN Cell Bank (RIKEN BRC, Tsukuba, Japan). DLD-1 cells were from the American Type Culture Collection (Manassas, VA). HT-29 cells were from Sumitomo Pharma Co., Ltd. (Osaka, Japan). We cultured the 293 and DLD-1 cells in Dulbecco’s Modified Eagle’s Minimum Essential Medium (Catalog number 08456–65, Nacalal Tesque, Kyoto, Japan) supplemented with 10% fetal bovine serum (FBS) and 100 μg/ml kanamycin. We cultured Caco-2 cells in minimum essential medium (Catalog number M4655, Sigma–Aldrich, St. Louis, MO) supplemented with 20% FBS, 0.1 mM Non-Essential Amino Acids (Catalog number M7145, Sigma–Aldrich), and 100 μg/ml kanamycin. We cultured the LoVo cells in Ham’s F-12 media (Catalog number N6658, Sigma–Aldrich) supplemented with 10% FBS and 100 μg/ml kanamycin and cultured the HT-29 cells in McCoy's 5a modified medium (Catalog number 16600082, Thermo Fisher Scientific) supplemented with 10% FBS and 100 μg/ml kanamycin.
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7

Culturing and Transfecting Human Cell Lines

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HeLa cells were purchased from American Type Culture Collection (ATCC). Primary human foreskin keratinocytes (PHK) were prepared from neonatal foreskins obtained from the University of Massachusetts Memorial Hospital as described [38 (link)]. Immortalized human foreskin keratinocyte cells (NIKS) with stable expression of HPV E6, E6 mutant F2V or E7 were established using the pBabe retroviral system as described in our previous study [39 (link)]. Both PHK and NIKS cells were maintained on mitomycin C–treated J23T3 feeder cells in F-medium as described [39 (link)]. RPE1 is a human telomerase reverse transcriptase–expressing human retinal pigment epithelium cell line obtained from Clonetech Laboratories. RPE1 cells were cultured in 1:1 DME and Ham's F12 media (Sigma-Aldrich) as described [19 (link)]. miRNA mimics, siRNAs and negative control RNA (a random sequence) were purchased from Sigma-Aldrich. Cells were transfected with 60 nM of either miRNA or siRNA using Lipofectamine 2000 (Life Technologies) according to the manufacturer's recommended protocol.
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8

Culturing A549 Lung Epithelial Cells

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A549 (Human type II alveolar epithelial cell line) were obtained from ATCC and maintained in HamsF12 media (Sigma) with 10% FBS and supplemented with 1 mM l‐glutamine.
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9

Inducible Expression of Kv2.1 in CHO-K1 Cells

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CHO-K1 cells were maintained in tissue culture-treated polystyrene dishes (Nunc) at 37 °C in a 5% CO2 atmosphere in Ham’s F-12 media (Sigma) containing 10% fetal bovine serum (FBS, Gibco) and 1% penicillin–streptomycin solution (Life Technologies). A CHO-K1 cell line expressing rat Kv2.1 voltage-gated potassium channels13 (link) was cultured with 1 μg/mL blasticidin (ThermoFisher) and 25 μg/mL zeocin (Invitrogen) to retain transfected vectors. Before experiments, 1 μg/mL minocycline was added to the cell media 2 days prior to imaging to induce Kv2.1 expression.
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10

Ovarian Cancer and Endothelial Cell Lines

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Dr. Yoshihiro Kikuchi kindly provided human KF28 (RRID:CVCL_V533) ovarian cancer cells. RMG‐I human ovarian clear cell carcinoma and HUVEC human endothelial cell lines were obtained from the JCRB Cell Bank (RRID: CVCL_1662) and the Riken Cell Bank (Tsukuba, Japan; RRID: CVCL_2959). KF28 cultures were grown in DMEM (Sigma‐Aldrich, St. Louis, MO, USA), RMG‐I cells in Ham's F12 media (Sigma‐Aldrich), and EBM‐2 medium (Lonza, Walkersville, MD, USA) was used to cultivate HUVECs. All media were prepared with 10% fetal bovine serum (Sigma, Aldrich), 2 mM L‐glutamine (Lonza), and 100 U/mL penicillin/streptomycin (Lonza) and were then incubated at 37°C in a 5% CO2 atmosphere.
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