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6 protocols using glycerol

1

Optical Fiber Sensor Assembly Protocol

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De-ionized (DI) water (Thermo Scientific Easypure II, Göteborg, Sweden) was used for all processes with resistivity more sizeable than 16 MΩ cm−1. Silver nitrate (AgNO3, 99%), polyvinylpyrrolidone (PVP, Mw ∼ 55 000, 99%), mercaptosuccinic acid (MSA, HOOCCH(SH)CH2COOH, 97%), and (3-aminopropyl)triethoxysilane (APTES, 99%) were obtained from Sigma Aldrich. Ethylene glycol (EG, C2H6O2, >99.7%), sodium sulfide nonahydrate (Na2S·9H2O, >98%), and sodium hydroxide (NaOH, 96%) were supplied by Guangdong Guanghua Sci-Tech Co., Ltd (China). Ethanol (EtOH, C2H5OH, 99.8%) and d-glucose (C6H12O6, 99%) were provided by Fisher Ltd (UK), and glycerol (C3H8O3, 99%) was obtained from Duksan Pure Chemicals Co. (Ltd, Korea). Polydimethylsiloxane (PDMS, Sylgard 184) was obtained from Dow Corning Co., USA. All chemicals were of analytical grade and used without further purification. The sensor was assembled by aligning a multimode optical fiber (numerical aperture of 0.37, JFTLH-Polymicro Technologies) with a core diameter of 200 μm.
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2

Pectin-based antimicrobial nanocomposites

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Pectin powder from citrus was purchased from Daejung Chemicals & Metals Co., Ltd. (Siheung, Korea). Glycerol was obtained from Duksan Pure Chemicals Co., Ltd. (Ansan, Korea). Calcium chloride (CaCl2) and ZnO nanopowder were purchased from Sigma Aldrich Chemicals (St. Louis, MO, USA). Nutrient broth (NB) was purchased from DB DifcoTM (Sparks, MD, USA). Escherichia coli ATCC 8739 and Staphylococcus aureus ATCC 6538 P were procured from the American Type Culture Collection (ATCC).
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3

Isolation and Culturing of Foodborne Pathogens

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An LM strain isolated from the gloves of a slaughterhouse worker [28 ] was stored in tryptic soy broth (TSB, MB cell, Seoul, Korea) containing 0.6% yeast extract with 20% glycerol (Duksan, South Korea) at −80 °C. After thawing at ambient temperature, 10 μL of LM inoculum was added into 10 mL of TSB containing 0.6% yeast extract and then cultured at 36 ± 1 °C for 24 h in a 140 rpm rotary shaker (VS-8480, Vision Scientific, Daejeon, Korea).
E. coli (EHEC) strains (NCCP 13720, 13721) including E. coli O157:H7 (NCTC 12079) were obtained from the Ministry of Food and Drug Safety (MFDS) in Korea. After thawing frozen strains that were stored at −80 °C, they were cultured in the same way as described above. All strains were centrifuged at 4000 rpm for 10 min (VS-550, Vision Scientific, Daejeon, Korea) and the supernatant was removed. Pellets were harvested by centrifugation (4000 rpm for 10 min), washed with 10 mL of 0.1% peptone water, and resuspended with 0.1% peptone water to a final concentration of approximately 9.0 log CFU/mL.
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4

Freeze-Drying Yeast with Protective Agents

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The protective agents (Table 1) were purchased from Sigma-Aldrich except d-mannose, d-xylose, d-fructose, d-galactose (Duchefa, Haarlem, The Netherlands), and glycerol, magnesium sulfate heptahydrate (Duksan, Ansan, Korea), and l-fucose (Carbosynth, Newbury, UK), and peptone, skim milk, yeast extract (Difco, Detroit, MI, USA), and taurine (Daejung, Siheung, Korea), and isomaltooligosaccharide, l-rhamnose (WAKO, Osaka, Japan), and d-maltose (YAKURI, Osaka, Japan).
To prepare the cells, S. cerevisiae 88-4 was cultured in YPD broth (1% inoculum) at 30 °C for 18 h, corresponding to approximately 107 CFU/mL. Cells were centrifuged at 3000× g at 4 °C for 15 min and washed with 0.85% NaCl solution. Prior to the experiments, all protective agents were sterilized under UV for 18 h. The concentrations of each protectant were described in Table 1. Cells were resuspended in 1 mL protective agent solution as the freeze-dried sample, or 1 mL distilled water as a blank. Suspensions were frozen in a deep freezer at −80 °C for 3 h. Subsequently, freeze-drying was conducted under vacuum at 5 Pa for 24 h with a condenser temperature of −51 °C. Freeze-dried cells were immediately used to determine the survival rate. All protective agents were used directly with the yeast pellet.
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5

Fura-8AM Fluorescence Imaging of Nematode-challenged Larval Midgut

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L5 larvae were challenged with nematode (80 IJs/larva) for 8 h. Midgut tissues of the challenged larvae were dissected carefully in TC-100 insect medium and incubated in a wet chamber for 10 min. After removing TC-100, it was then incubated with 3 µL Fura-8AM (1 mM) in RT for another 10 min. Then midgut was washed three times with PBS and midgut cells were permeabilized with 0.2% Triton X-100 in PBS for 20 min at RT. Following washing three times with PBS, the midgut was incubated for 5 min with DAPI (1 μg/mL) in PBS for staining the nucleus. Finally, the midgut was washed three times with PBS and fixed with 50% glycerol (Duksan, Seoul, Korea). Fura signals in the midgut were observed under a fluorescence microscope (DM500, Leica, Wetzlar, Germany) at 200× magnification. Fluorescence changes were analyzed by using ImageJ software (https://imagej.nih.gov/ij). Each treatment was replicated three times with independent sample preparations.
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6

Chitosan-based Bioactive Conjugate Synthesis

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Chitosan (low molecular weight), EDTA (99%), (3-aminopropyl)triethoxysilane (APTES, 98%), isopropanol (C3H8O, 99.7%), acetic acid (C2H4O2, 99.7%), 1-ethyl-3-(3-(dimethylamino)propyl) carbodiimide (EDC), N-hydroxysuccinimide (NHS, 98%), and copper (II) nitrate trihydrate (Cu(NO3)2.3H2O, 99%) were purchased from Sigma-Aldrich Co. (St Louis, MO, USA). Deionized water was produced by Biosesang Co. (Seongnam-Si, Korea). Glycerol (C3H8O3, 99%) was purchased from Duksan Pure Chemicals Co. (Ansan, Korea), and polydimethylsiloxane (PDMS) was purchased from Dow Corning Co. (Hemlock, ML, USA).
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