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16 protocols using t175 flask

1

Isolation and Expansion of hMSCs

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Primary hMSCs were isolated from bone marrow obtained from healthy donors, Galway University Hospital, Galway, Ireland. All procedures followed were in accordance with ethical standards of the responsible local committees for human experimentation (institutional and national) and the Helsinki Declaration of 1975, as revised in 2000, and informed consent was obtained from all marrow donors included in the study. Isolated hMSCs were expanded in a growth medium containing α-minimal essential medium (α-MEM, Life technologies, Carlsbad, CA, USA), 10% foetal bovine serum (FBS, Sigma, St. Louis, MO, USA) and 1% penicillin/streptomycin (P/S, Life technologies) supplemented with 5 ng/mL fibroblast growth factor-2 (FGF-2, Peprotech, Rocky Hill, NJ, USA) and cultured at 37 °C, 5% CO2. The medium was refreshed 3 times weekly and cells were sub-cultured or frozen at 90% confluence in T175 flasks (Sarstedt, Newton, NC, USA). The immortalized human monocytes THP1 were cultured in an RPMI (Sigma) growth medium with 10% FBS and 1% P/S, and incubated at 37 °C, 5% CO2. The medium was refreshed 3 times weekly and the cells were sub-cultured or frozen at 90% confluence in T175 flasks (Sarstedt).
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2

Expansion and Serum-Free Conditioning of Mesenchymal Stromal Cells

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MSCs were thawed and expanded in chemically defined complete medium (DMEM) supplemented with 10% FCS (Sigma Aldrich, F7524), 1% Pen/Strep and 1% amphotericin B until 80–90% confluency, passaged with trypsin (Gibco, 25300-096) and seeded at a defined density of 4 × 106 cells per T175 flask (Sarstedt, Nümbrecht, Germany, 833912002). All cells used were at passage 2, cell morphology was assessed daily, and viability was measured using Trypan blue dye exclusion in conjunction with an automated cell counter (ThermoFisher Countess 3). After 24 h, cells were washed twice with 10 mL filtered (0.22 µm filter (Sarstedt, 831822)) PBS +/+ and then cultured in 22 mL serum-free DMEM (plus 1% Pen/Strep, 1% amphotericin). After 48 h and doubling of the cell number, which was estimated from preliminary studies with a population doubling level (PDL) of 3 (PDL = 2 + 3.322 (log 8 × 106–log 4 × 106)), the conditioned medium was collected and transferred into 50 mL Falcon tubes (Sarstedt, 64547254) and precentrifuged at 3000× g for 20 min at 4 °C to remove undesired cell debris. The obtained supernatant (SN) was carefully collected without disturbing the cell debris pellet and immediately processed.
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3

Murine Microglial Cell Culture and EV Isolation

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BV2, an immortalized murine microglial cell line, was cultured in growing medium containing Dulbecco’s modified Eagle medium (DMEM) (Gibco™GlutaMAX™, Thermo Fisher Scientific) supplemented with 10% heat-inactivated fetal bovine serum (FBS) and 1% penicillin/streptomycin (Thermo Fisher Scientific) in 5% CO2 in air at 37 °C in a humidified incubator. Cells were re-cultured every 2 days starting at a concentration of 2 × 105 cells/ml in T75 flask (Sarstedt). For a large scale of EV collection, microglia were plated in T175 flask (Sarstedt). For inflammatory activation, cells were challenged with 1 μg/ml LPS (Sigma-Aldrich, Clony 0127-B8) for 12 h and then grown for 12 h in serum-free media prior to collection of EVs. For TNF inhibition experiment, microglia were plated in growing medium either with 1 μg/ml LPS, 200 ng/ml etanercept, or both for 12 h. EVs were collected from serum-free media 12 h after treatment.
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4

Baculovirus Production of DIO1 Mutants

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pUltraBac1 constructs carrying sequences of different DIO1 mutants were used for the production of Autographa californica multiple nucleopolyhedrovirus-derived bacmids by the transformation of E. coli DH10Bac cells following the Bac-to-Bac® TOPO® protocol (Thermo Fisher Scientific) [29 ].
Cellfectin® II (Thermo Fisher Scientific) was used to transduce Sf9 cells with isolated and purified bacmids according to the manufacturer’s protocol. The baculovirus containing supernatant (P1 stock) was collected 96 h after transfection. For generation of a second viral stock (P2) 2 × 107 Sf9 cells were seeded in a T175 flask (Sarstedt, Nümbrecht, Germany) filled with 25 mL medium and inoculated with 1.5 mL of the P1 stock. The P2 viral stock was collected after 96 h. Successful transduction of Sf9 cells and the generation and amplification of the baculovirus were checked by the co-expression of an enhanced green fluorescent protein (eGFP) gene, also encoded in the pUltraBac1 donor plasmid. Viral titration was carried out following the assay published by Philipps et al [30 (link)].
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5

Isolation of NK Cells from Donor Blood

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Healthy donor blood collected in trisodium citrate blood collection tubes was diluted with Dulbecco’s Phosphate Buffered Saline (DPBS, Gibco, Life Technologies Limited) in 1:1 ratio and overlayed on a 1.077g/mL separation medium (Biocoll, Merck Millipore). Density centrifugation was performed at room temperature (400g for 30min) without acceleration and brake. PBMCs were collected and washed with PBS followed by centrifugation at 300g for 8min at room temperature. Then plastic adherence was performed to deplete monocytes by incubating them in a T175 flask (Sarstedt) at 37°C and 5% CO2 for 1 hour. For NK isolation NK MACS Isolation Kit (Miltenyi Biotec) was used according to the manufacturer’s instructions. Purity of isolated NK cells was routinely tested and ranged from 90% to 97%. After isolation 5 U/ml recombinant human IL-15 (50µg, Immuno Tools) was added to NK cells that were used for functional experiments after overnight incubation.
Use of peripheral blood from healthy donors was approved by the institutional review board of the Medical Faculty of the University of Duisburg-Essen (approval number 07-3500 and 08-3590) and each donor signed an informed consent form.
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6

Isolation of PBMC, NK, and T Cells

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Healthy donor blood collected in trisodium citrate blood collection tubes (Sarstedt) diluted with Dulbecco’s Phosphate Buffered Saline (DPBS, Gibco, Life Technologies Limited) in a 1:1 ratio and overlayed on a 1.077 g/mL separation medium (Biocoll, Merck Millipore). Density centrifugation was performed at room temperature (400 g for 30 min) without acceleration and brake. Same methodology was used during the isolation of T cells from patient ascites samples. PBMCs were collected and plastic adherence was performed to deplete monocytes by incubating them in a T175 flask (Sarstedt) at 37 °C and 5% CO2 for 1 h. For NK isolation, NK MACS Isolation Kit (Miltenyi Biotec) was used according to the manufacturer’s instructions. After isolation 5 U/ml recombinant human IL-15 (50 µg, Immuno Tools) was added to NK cells that were used for functional experiments after incubation overnight. For T cell isolation, CD3 human microbeads (Miltenyi Biotec) were used according to the manufacturer’s instructions. Purity of isolated T cells was routinely tested. In case of overnight resting 5–10 U/ml of recombinant human IL-2 (50 µg, Immuno Tools) was added to T cells.
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7

Isolation and Characterization of Murine MSCs

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Balb/c mice were purchased from Envigo Laboratories (Oxon, UK), housed and maintained following the conditions approved by the Animal Care Research Ethics Committee of the National University of Ireland, Galway (NUIG), under individual and project authorisation licenses from the Health Products Regulatory Authority (HPRA) of Ireland, in a fully accredited animal housing facility. For murine MSC (mMSC) isolation, Balb/c mice were euthanised by CO2. The femur and tibia were removed and cleaned of connective tissue, and bone marrow cells were flushed from the bones. Cells were filtered and plated at a density of 1 × 106 cells per T175 flask (Sarstedt, Wexford, Ireland) at 37 °C in normoxia (21% O2) in MEM (ThermoFisher Scientific, Waltham, MA, USA) supplemented with 10% FBS and 1% penicillin/streptomycin. Non-adherent cells were removed 24 h later through a medium change. This process was repeated until cells reached confluency. MSCs were characterised according to the criteria set out by the International Society for Cellular Therapy (ISCT) [31 (link)].
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8

Culturing BALB/c Mesenchymal Stem Cells

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BALB/c MSCs were seeded at a density of 50,000 cells/mL of MSC medium in a T175 flask (Sarstedt). 12 h after seeding, medium was removed and replaced with mouse MSC medium containing recombinant mouse TGF-β at a concentration of 50 ng/mL (Bio-Techne, Abingdon, UK) (see Table S2 for additional information). Cells were then placed in a humidified tissue culture incubator at 37°C, 5% CO2. 72 h later, medium was removed and cells were washed twice with Dulbecco’s phosphate-buffered saline (DPBS) (Thermo Fisher Scientific). To detach the cells from the flasks, 5 mL/T175 flask of 0.25% trypsin (Sigma-Aldrich) was added and cells were incubated for 3 min at 37°C, 5% CO2. Trypsin was neutralized by adding twice the volume of serum-containing medium. Cells were then centrifuged at 400 × g, washed twice with DPBS, and counted before use in subsequent experiments.
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9

THP-1 Macrophage Differentiation Protocol

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Human monocytic THP-1 cells were obtained from the ATCC and maintained in RPMI-1640 medium (Lonza, Basel, Switzerland) with 10% fetal bovine serum (FBS; Gibco, Lofer, Austria), 2 mM L-glutamine, 100 U/mL penicillin, and 100 μg/mL streptomycin in a humidified atmosphere of 5% CO2 at 37°C. THP-1 monocytes were cultured in T175 flasks (Sarstedt, Austria). For the experiments described below, THP-1 monocytes were differentiated into macrophages by culturing the cells at a density of 0.2 × 106 cells/mL in the presence of 200 nM PMA for 72 h. Further details of the particular cell culture conditions in each experiment are stated in the following methods’ description.
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10

Myoblast Culture Maintenance Protocol

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Myoblasts were cultured in T‐175 flasks (Sarstedt, code: 83.3912.002) in Dulbecco's modified Eagle medium (DMEM; Thermo Fisher Scientific, code: 31966021) containing l‐alanyl‐l‐glutamine (GlutaMAX), 10% fetal bovine serum (FBS; Thermo Fisher Scientific, code: 10500064), and 1% penicillin–streptomycin (Thermo Fisher Scientific, code: 15140122). Cultures were maintained at the subconfluent level to prevent the loss of myoblastic component as the cells were passed.
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