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8 protocols using centrin

1

Immunofluorescence Microscopy of Cytoskeletal Proteins

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Primary antibodies used were against glutamylated tubulin (1:800 [tissue sections] and 1:500 [cell lines]; mouse; GT335; AdipoGen), pericentrin (1:250; rabbit; ab4448; Abcam), centrin (1:500; rabbit; N-17; Santa Cruz Biotechnology, Inc.), centrin (1:500; mouse; 20H5; EMD Millipore), A647-conjugated centrin (1:500; mouse; 20H5; EMD Millipore), γ-tubulin (1:500; mouse; GTU88; Sigma-Aldrich), α-tubulin (1:50; rat; YL1/2; AbD Serotec), p53 (1:100; mouse; DO-1; EMD Millipore), E-cadherin (1:30; rabbit; Cell Signaling Technology), and CP110 (1:250; rabbit; Jiang et al., 2012 (link)). The secondary antibodies FITC, Cy5, and rhodamine red (1:50 [tissue sections] and 1:200 [cell lines]; Jackson ImmunoResearch Laboratories, Inc.) as well as Alexa Fluor 488 and 647 (1:500 [cell lines]; Thermo Fisher Scientific) were also used.
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2

Immunofluorescence Staining of Centrosomal Proteins

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The following commercial antibodies were used: CEP290 (C-terminus), Bethyl Laboratory, A301-659A; acetylated α-tubulin, Santa Cruz, sc-23950; Centrin, pan-Centrin antibody from EMD Millipore, 04-1624, raised against Chlamydomonas Centrin and reported to recognize all mouse Centrin isoforms 1-4 (41, 84); CEP164, Proteintech, 22227-1-AP; CEP164, Santa Cruz, sc-515403; MKS3 (cultured cells) Proteintech, 13975-1-AP; Atto488-Tuba1, Antibodies-online.com, ABIN1169085. Antibodies were used at a concentration of 10 μg/mL, with the exception of Atto488-Tuba1 which was used at a concentration of 7.5 μg/mL. Secondary antibodies used were F(ab’)2-goat anti-rabbit IgG Alexa 488, F(ab’)2-goat anti-mouse IgG Alexa 555, and F(ab’)2-goat anti-mouse IgG Alexa 647 (Thermo Fisher, 8 μg each).
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3

Immunofluorescence Staining Protocols

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The following commercial antibodies were used CEP290, Bethyl Laboratory, A301-659A; acetylated a-tubulin, Santa Cruz, sc-23950; NPHP5, Proteintech, 15747-1-AP; Centrin, EMD Millipore, 04-1624; CEP164, Proteintech, 22227-1-AP; CEP164, Santa Cruz, sc-515403; wheat germ agglutinin (WGA)-A647, Molecular Probes, W32466; Atto488-Tuba1, Antibodies-online.com, ABIN1169085. Rat anti-CEP290 antibody was a gift from the Swaroop laboratory. Mouse anti-1D4 was generated in house. For SIM and confocal imaging, antibodies were used at a concentration of 1 μg/150 μL. For STORM, antibodies were used at a concentration of 10 μg/mL, with the exception of rat anti-CEP290 antibody and Atto488-Tuba1 which were used at concentrations of 5 μg/mL and 7.5 μg/mL, respectively.
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4

Immunofluorescence Imaging of Centrosomal Proteins

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Antibodies used included: Mib1 (M5948; Sigma-Aldrich, St. Louis, MO), PCM1 (H262; Santa Cruz, Santa Cruz, CA), Cep131 (A301-415A; Bethyl Laboratories, Montgomery, TX), Cep90 (Kim and Rhee, 2011 (link)), Ki-67 (ab15580; Abcam, Cambridge, MA), GT335 (AG-20B-0020-C100; Adipogen, Switzerland), BBS4 (Kim et al., 2012 (link)), Rab11 (71–5300; Life Technologies, Carlsbad, CA), Rab8 (a gift from J. Peranen, University of Helsinki, Helsinki, Finland and 610844; BD Biosciences, San Jose, CA), α-tubulin (T5168; Sigma-Aldrich), Cep290 (A301-659A; Bethyl Laboratories), Ofd1 (a gift from J. Reiter, University of California, San Francisco, USA; Singla et al., 2010 (link)), Talpid3 (Kobayashi et al., 2014 (link)), Myc (sc-40; Santa Cruz), Flag (F3165; Sigma-Aldrich), centrin (04–1624; Millipore, Billerica, MA), GFP (G1544; Santa Cruz), Cep164 (a gift from Eva Lee, University of California, USA), IFT88 (13967-1-AP; Proteintech, Chicago, IL).
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5

Immunofluorescence Staining of Cellular Components

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Cells were fixed in ice-cold methanol for 3 min, permeabilized in
blocking buffer (2.5% BSA or FBS, 0.1% TritonX-100,
0.03% NaN3 in DPBS). Primary and secondary antibodies were
diluted in blocking buffer and incubated for 2 h at RT. Coverslips were mounted
using Gelvatol, or Prolong Diamond (ThermoFisher Scientific) and imaged with the
inverted confocal microscope Zeiss LSM700. Images were processed with
ImageJ/FIJI. For 3D-structured illumination microscopy (SIM) (Fig. 1e), WT and KO FEFs were plated on 1.5-mm
coverslips and immunostained as above. Coverslips were mounted with Vectashield
(Vectorlabs). 3D-SIM imaging was performed on a Zeiss Elyra PS.1 microscope
equipped with a 100x/1.40 oil objective lens. Exciting light was directed
through a movable optical grating to generate a fine-striped interference
pattern on the same plane. Z-stacks of 15 optical sections with a step size of
0.1 μm were acquired to generate images in maximum intensity projection.
The epitope of the ASPM (216-1) antibody43 (link), NDNYGLNQDLESES, is located prior to the TALEN target
site. The following antibodies were used at 1:100 – 1:2000: Centrin
(Millipore 20H5), Par6α (SCBT sc-14405), Par6α (Abcam ab180159),
β-actin (Proteintech 20536-1-AP), ASPM (SCBT sc-98903), ASPM (gift from
J. Bond, 216-1), Ninein (Biolegend Poly6028), aPKCζ (SCBT sc-216).
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6

Immunofluorescence Staining of Cellular Components

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Cells were fixed in ice-cold methanol for 3 min, permeabilized in
blocking buffer (2.5% BSA or FBS, 0.1% TritonX-100,
0.03% NaN3 in DPBS). Primary and secondary antibodies were
diluted in blocking buffer and incubated for 2 h at RT. Coverslips were mounted
using Gelvatol, or Prolong Diamond (ThermoFisher Scientific) and imaged with the
inverted confocal microscope Zeiss LSM700. Images were processed with
ImageJ/FIJI. For 3D-structured illumination microscopy (SIM) (Fig. 1e), WT and KO FEFs were plated on 1.5-mm
coverslips and immunostained as above. Coverslips were mounted with Vectashield
(Vectorlabs). 3D-SIM imaging was performed on a Zeiss Elyra PS.1 microscope
equipped with a 100x/1.40 oil objective lens. Exciting light was directed
through a movable optical grating to generate a fine-striped interference
pattern on the same plane. Z-stacks of 15 optical sections with a step size of
0.1 μm were acquired to generate images in maximum intensity projection.
The epitope of the ASPM (216-1) antibody43 (link), NDNYGLNQDLESES, is located prior to the TALEN target
site. The following antibodies were used at 1:100 – 1:2000: Centrin
(Millipore 20H5), Par6α (SCBT sc-14405), Par6α (Abcam ab180159),
β-actin (Proteintech 20536-1-AP), ASPM (SCBT sc-98903), ASPM (gift from
J. Bond, 216-1), Ninein (Biolegend Poly6028), aPKCζ (SCBT sc-216).
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7

Cell Cycle Regulation Assay

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The following chemicals were used: RO3306 (Axon MedChem), Okadaic Acid sodium salt (A.G. Scientifix), Thymidine and 2’-Deoxycytidine hydrate (Santa Cruz Biotechnology). The following antibodies were used; BUB1B (BubR1) (#4116), Cyclin B1 (#12231), Phospho-(Ser) CDK Substrate (#2324), pCdc2-Tyr15 (CDK1-Y15) (#9111), Plk1 (#4535), Aurora B (#3094) and Lamin A/C (#4777) (Cell Signaling Technologies), Securin (ab3306) (Abcam), Cyclin A (sc-596), Cdc2 (CDK1) (sc-137034), Mad2 (sc-47747), Cdc25C (sc-327) (Santa Cruz Biotechnology), centrin (#04–1624) (Millipore) and β-actin (A5441) (Sigma-Aldrich). Anti-Greatwall was obtained as previously described (Vigneron et al., 2009), and monoclonal β-Tubulin hybridoma antibody was a generous donation from Dr Natalie Morin (CRBM, France).
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8

Antibody-Based Protein Detection Techniques

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Antibodies against the following were used for western blotting (WB), immunofluorescence (IF) and immunoprecipitation (IP):
α-tubulin (DM1A; Sigma-Aldrich, T6199 mouse; 1:2500 IF, methanol; 1:5000 WB)
β-actin (Sigma-Aldrich, clone AC-15 mouse; 1:10,000 WB)
Centrin (Millipore, (20H5) Mouse;1:5000 IF, methanol)
• CREST (Europa Bioproducts, FZ90C-CS1058, Human, 1:2000, methanol)
HA tag (Roche Diagnostics, 3F10 rat; 1:200 IF, formaldehyde; 1:1000 WB)
PCNA (Abcam, ab18197, rabbit, 1:2000 IF, methanol)
• PeriCentrin (Covance, PRB-432C; rabbit, 1:2000 IF, methanol)
• PLK4 (Sigma-Aldrich, clone 6H5 mouse, 1:1000 IF, methanol; 1:500 WB)
Tiam1 (Bethyl Laboratories, rabbit, A300-099A, 1:1000 WB)
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