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Bio sybr green master mix

Manufactured by Takara Bio
Sourced in Japan

The Bio SYBR Green Master mix is a ready-to-use solution for real-time PCR amplification and detection. It contains SYBR Green I, a fluorescent dye that binds to double-stranded DNA, enabling the quantification of target DNA sequences.

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3 protocols using bio sybr green master mix

1

Quantifying Islet Gene Expression

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Total RNA of islets or cells was extracted by TRIzol reagent (Invitrogen, USA) according to the manufacturer's instruction. 0.5–1 μg total RNA was transcribed to complementary DNA (cDNA) using the cDNA ReverseTranscription kit (Cat. 4375575, Applied Biosystem, USA). One microliter cDNA was mixed with 0.25 μM forward primer, 0.25 μM reverse primer, 5 μl Bio SYBR Green Master mix (Takara, Japan) and dH2O up to 10 μl. qPCR was performed in triplicate on Applied Biosystem 7500 fast real-time PCR system (Thermo Fisher Scientific, USA). To calculate the relative transcriptional expression, the Ct values of genes were normalized by average Ct values of GAPDH as ΔCt. The relative transcriptional expression of interested genes was indicated with 2(−−ΔΔCt). The sequences of forward and reverse primers were as follows: mouse Glucagon, 5′-TTC CCA GAA GAA GTC GCC ATT−3′, 5′- GGT GCT CAT CTC GTC AGA GAA−3′; mouse CFTR, 5′- GCT GAC ACT TTG CTT GCC CTG AG−3′, 5′- GCT TGC TGA TGG TCG ACA TAG GG−3′; mouse PC2, 5′- AGA GAG ACC CCA GGA TAA AGA TG−3′, 5′- CTT GCC CAG TGT TGA ACA GGT−3′, mouse GAPDH, 5′- AAC GAC CCC TTC ATT GAC−3′, 5′- TCC ACG ACA TAC TCA GCA C−3′.
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2

PPARD Agonist Gene Expression Analysis

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Total RNA was reverse transcribed with random hexamers (Takara). Real-time quantitative-PCR was conducted on a 7900HT Real-Time PCR Detection system (ABI) using the Bio SYBR Green Master Mix (Takara) or Taqman Master Mix (ABI). Amplification efficiencies of each gene-specific primer pair was determined using a five-fold serial dilution series. Primers with an efficiency of 1.8 to 2.15 were used for further analyses (Table S8). The housekeeping gene BACT was used to normalize relative fold changes between PPARD agonists (GW0742)-treated samples and untreated (DMSO) samples. Each qPCR analysis was repeated for at least three independent biological replicates, and significance was analyzed using a Student's t test.
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3

RNA Extraction, cDNA Synthesis, and qRT-PCR Analysis

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Total RNA were isolated from cells using InviTrap Spin Cell RNA Mini Kit (Stratec Molecular, Germany) according to the manufacturer's protocol. RNA concentration and purity was verified by optical density (OD) measurement on BioTek Eon™ Microplate Spectrophotometer.
cDNA synthesis was performed with PrimeScript RT Master Mix (Perfect Real Time, Takara; Japan) according to the manufacturer's instruction provided with the kit.
Quantitative Real-Time PCR was performed using an Eco Real-Time PCR System (Illumina; San Diego, California, U.S.). The total reaction volume (10 μl) consisted of: 0.2 nM of forward and reverse primers, cDNA template, 5 µl Takara BioSYBR Green Master Mix, and DNAase/RNAase free water. The amplification conditions were as follow: an initial step of 95°C for 30 s, then 40 cycles of 95°C for 5 s, 60°C for 15 s. The gene-specific primers that have been used are presented in the Table 2. HPRT1 was used as a reference for gene expression normalization, performed according to the 2 -ΔΔCt method [30] .
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