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7 protocols using human nk cell isolation kit

1

Isolation of Human and Mouse NK Cells

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Normal peripheral blood was extracted from a vein in the elbow of female volunteers. Then, peripheral blood mononuclear cells (PBMCs) were separated with Ficoll (GE Healthcare, USA); we reserved the layer containing these cells and washed it with sterile PBS 3 times. Peripheral NK cells (pNK cells) were isolated from the PBMCs with a human NK-cell isolation kit via negative selection (STEMCELL, Canada) and further cultured in RPMI 1640 (HyClone) medium supplemented with FBS and antibiotics. To isolate NK cells from the mouse spleen, ~6- to 8-w-old female mice on the C57 background were sacrificed, and their spleens were taken out. We cut the spleens into pieces, removed the debris with 40-μm filters (FALCON) and centrifuged the cell suspensions at 1000 rpm for 10 min. Then, red blood cell lysis buffer (BioLegend, China) was used to lyse the red blood cells. Then, all the cells were incubated with reagents from a mouse NK-cell isolation kit (Miltenyi, Germany) and passed through a magnetic column (Miltenyi), and the mouse NK cells were isolated. The purity of isolated human pNK cells and mouse spleen NK cells was evaluated by flow cytometric analysis, and cells were used in further studies when their purity was greater than 90%.
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2

NK Cell Isolation from PBMCs

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NK cells were isolated from PBMC by RoboSep (Stemcell) using the human NK cell isolation kit (17955, Stemcell).
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3

NK Cell Adhesion Assay Protocol

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Adhesion assay protocol was adapted from Strazza et al. [28 (link)]. Non-cancer control primary NK cells were isolated from PBMC by magnetic cell sorting using human NK cell isolation kit (Stemcell, Vancouver, British Columbia, Canada) according to manufacturer’s instructions. NK cells were resuspended at a density of 1 × 105/100µL of NK MACS media (Miltenyi Biotec) supplemented with 100 IU IL-2 (Peprotech) and treated with 100 ng IL-15 (Immunotools) and/or 100 ng/mL fractalkine (Peprotech) for 2 and 24 h. NK cells were also treated with OAC patient-derived TCM or ACM for 2 and 24 h with and without pre-treatment with 5 nM CX3CR1 antagonist E6130 (MedChemExpress, Monmouth Junction, NJ, USA) for 1 h prior to exposure to ACM. A 96 well plate was coated with goat-anti-human IgG (Fc specific) in PBS and incubated overnight at 4 °C. Plates were subsequently coated with 2.5 µg/mL MAdCAM-1 (R&D, Minneapolis, MN, USA) for 1 h at 37 °C. NK cells were stained with CFSE and allowed to adhere for 20 min at 37 °C. Unbound cells were washed away. Unwashed wells were used as controls. The percentage of adherent cells was determined by a fluorescent plate reader and calculated as follows: Avg intensity in wellAvg intensity in unwashed well × 1001
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4

Isolation and Culture of Human and Murine NK Cells

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Human blood samples from normal healthy donors were drawn for research purposes under a protocol approved by the institutional review board with informed consent. PBMCs were isolated by density gradient centrifugation using lymphocyte separation medium (MP Biomedicals, Solon, OH). Human NK cells were purified from PBMCs by negative selection using a human NK cell isolation kit (StemCell Technologies) as described (33 (link)). These cells were 97–99% CD3-CD56+ as assessed by flow cytometry. The human NK cell line NKL was cultured in RPMI 1640 supplemented with 10% fetal bovine serum (FBS), 1 mM sodium pyruvate, and 200 U/ml recombinant IL-2 (rIL-2) (Roche). K562, 721.221, and KCL-22 cells were cultured in Iscove's modified Dulbecco's medium (IMDM) supplemented with 10% FBS and 2 mM L-glutamine. YAC-1, RMA, and RMA-s cells were cultured in RPMI1640 supplemented with 5% FBS and 2 mM L-glutamine. B16F10 cells were cultured in Dulbecco's modified Eagle's medium (DMEM) supplemented with 10% FBS and 2 mM L-glutamine. In some experiments, PBMCs were activated with 200 U/ml rIL-2 for 24 h. Male C57BL/6 mice were used at 6–7 weeks old. Murine NK cells were purified from splenocytes by negative selection using a mouse NK cell isolation kit (StemCell Technologies) according to the manufacturer's instructions.
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5

Isolation and expansion of primary NK cells

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Blood and tumour biopsies were collected during surgical resection. Tumour biopsies were enzymatically digested with collagenase type IV as previously16 (link),27 (link). Adipose tissue conditioned media (ACM) and tumour tissue conditioned media (TCM) were prepared as previously described16 (link),28 (link). PBMC were prepared by density gradient centrifugation. Non-cancer healthy control primary NK cells were isolated from PBMC by magnetic cell sorting using human NK cell isolation kit (Stemcell) according to manufacturer’s instructions. NK cells were expanded using MACS media (Miltenyi Biotech) supplemented with human AB serum (Sigma) and IL-2 (Peprotech) as per manufacturer’s instructions.
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6

Profiling Cell Surface Glycomes

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To profile cell surface glycomes from CD8+ T cells and NK cells, we first isolated CD8+ T cells and NK cells from cryopreserved PBMCs by negative selection using a Stem Cell Human CD8+ T Cell Isolation Kit (STEMCELL Technologies, catalogue# 17953) and Human NK Cell Isolation Kit (STEMCELL Technologies, catalogue# 17955) according to the manufacturer's instructions. Membrane proteins were then extracted using Membrane Protein Extraction Kit (ThermoFisher Scientific, catalogue# 89842), adding protease and phosphatase inhibitors (Halt™ Protease Inhibitor Cocktail, ThermoFisher Scientific, catalogue# 78425) to extraction buffers. proteins were quantified using Micro BCA™ Protein Assay Kit (ThermoFisher Scientific, catalogue# 23235)
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7

Isolation and Characterization of Human NK Cells

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Natural killer cells were harvested by using human NK cell isolation kit (#17955, Stem Cell Technologies). To assess the efficiency of NK cell sorting, enriched cells were analyzed by flow cytometry. Total RNA was extracted from NK cells using RNA‐quick purification kit (#RN001, Yi Shan Biotechnology), followed by RNA quality assay (Nanodrop, Thermo Scientific) and first‐strand cDNA synthesis (#K1622, Thermo Scientific). Amplification of cDNA was performed on ABI‐7500 system (Applied Biosystems). Primer sequences for RT‐qPCR were shown in Table S2. The results of gene expression were calculated using the 2ΔΔCT method.
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