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204 protocols using bca protein quantification kit

1

Western Blot Analysis of CXCL12 Protein

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RIPA lysis buffer containing protease inhibitor (Beyotime Biotechnology, Shanghai, China) was used to lyse the GC cells at 4°C, and centrifuged at 12,000 r/min for 5 min, with the supernatant collected as the whole protein extract. The BCA protein quantification kit (Beyotime Biotechnology, Shanghai, China) was employed to determine the protein concentration. Next, the protein samples were mixed with loading buffer, and the proteins were denatured in boiling water for 5 min. The protein samples were dissolved via sodium dodecyl sulfate polyacrylamide gel electrophoresis, then transferred to polyvinylidene fluoride (PVDF) membrane, which was then blocked by 5% skimmed milk for 2 h at ambient temperature. Rabbit anti-CXCL12 antibody (cell signaling technology, 3530, 1:1000) and rabbit anti-β-actin antibody (Abcam, ab8227, 1:1000) were loaded and the membrane was incubated overnight at 4°C. Next, the membrane was washed with tris buffered saline tween (TBST), and then incubated with goat anti-rabbit IgG H&L (HRP) (Abcam, ab205718,1:2000) for 1 h. After the PVDF membrane was washed in TBST, the protein bands were developed by a high-sensitivity ECL chemiluminescence kit (Beyotime, Shanghai, China).
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2

Western Blot Analyses of Epithelial-Mesenchymal Transition Markers

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As described in our previous study (Wu et al. 2021a (link)), the lysates of A549 and Bsab-2b cells were prepared with the BCA protein quantification kit (cat# P0010, Beyotime, CHN) for protein samples. Relevant protein samples were subjected to SDS-PAGE electrophoresis, followed by subsequent transfer onto polyvinylidene fluoride membranes. The membranes were incubated with primary antibodies at 4 ℃ overnight. Primary antibodies include E-cadherin (1:500, cat# ET1607-75, Huabio, CHN), N-cadherin (1:1000, cat# ET1607-37, Huabio, CHN), Vimentin (1:5000, cat# ET1610-39, Huabio, CHN), α-smooth muscle actin (α-SMA, 1:1000, cat# ET1607-53, Huabio, CHN), NEDD4L (1:1000, cat# ET1611-42, Huabio, CHN), TGFBR2 (1:2000, cat# ER1917-66, Huabio, CHN), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH, 1:10,000, cat# AB0037, Abway, CHN). After incubating with HRP-conjugated antibody (1:50,000, cat# ET1610-39, Huabio, CHN) for 60 min in normal temperature environment, the signal of protein band membrane was scanned by chemiluminescence instrument (cat# 5200, Tanon, CHN).
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3

Osteoclastogenesis Regulation by MSNs

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BMMs were seeded into six-well plates at the appropriate density and stimulated with 30 ng/mL M-CSF and 50 ng/mL RANKL plus either MSNs (16 or 64 μg/mL) or MSNs-ISL (16 or 64 μg/mL) for 30 min or 24 h. The cells were washed twice with ice-cold PBS and then lysed using RIPA lysate containing protease and phosphatase inhibitor. Protein content was determined using a BCA protein quantification kit (Beyotime Inc, Shanghai, China) following the manufacturer's protocol. Total proteins were transferred onto a polyvinylidene difluoride membrane, blocked in non-fat milk for 1 h at room temperature, and incubated overnight with the specific primary antibodies at 4 °C. GAPDH served as the protein internal standard and the standard for quantifying protein expression. The specific primary antibodies used were p38, p-p38, extracellular signal-regulated protein kinase (ERK), p-ERK, nuclear factor-κB (NF-κB) p65, p NF-κB p65, inhibitor of κBα (IκBα), p-IκBα, GAPDH (Cell Signaling Technology, Danvers, MA), c-Jun N-terminal kinase (JNK), p-JNK, tumor necrosis factor receptor-associated factor 6 (TRAF6), and nuclear factor of activated T cells (NFATc1; Santa Cruz Biotechnology, Santa Cruz, CA). The gray values of the band were quantified.
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4

Protein Expression Analysis in Cells

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Cells were treated with Res for 48 h, and then washed with ice-cold phosphate-buffered saline (PBS) three times and then lysed by RIPA buffer containing protease and phosphatase inhibitors. The protein concentrations were detected by bicinchoninic acid (BCA) protein quantification kit (Beyotime, P0012, Shanghai, China). Western bloting was performed by the method described elsewhere 31 (link). Briefly, proteins were separated by 10% SDS-PAGE and transferred to polyvinylidene difluoride membrane. The membrane was blocked by 5% skimmed milk in Tris-buffered saline (TBS-T) for 3 hours, followed by incubated with the primary antibody (rabbit anti-human NIS polyclonal antibody, 1:600; rabbit anti-human PTEN polyclonal antibody, 1:1000; rabbit anti-human E-cadherin polyclonal antibody, 1:1000, Proteintech, 20874-1-AP, Chicago, USA; rabbit anti-human GAPDH polyclonal antibody, 1:2000, Wanleibio, WL01547, Shenyang, China) overnight at 4°C. The next day, the primary antibody was discarded, and then the membrane was washed three times by TBST, followed by 1h incubation with horseradish peroxidase (HRP)-conjugated anti-rabbit IgG. The bands were visualized by the ECL system (Amersham Imager600, GE Healthcare Life Sciences, USA). The labeling signal was removed with a stripping buffer, and the membrane was incubated with another primary antibody until all the parameters were examined.
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5

Robust Protein Extraction and Quantification

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Protein extraction was proceeded in refrigeration room to avoid protein digestion. The tissues were first washed by phosphate-buffered saline (PBS) and quickly dissected using surgical scissors. Then the total protein was extracted by 8 M Urea in 100 mM NH4HCO3 (pH 8.0) containing Protease Inhibitor (Roche) and Phosphatase Inhibitor (Roche) on ice for 30 min, followed by 3 min sonication under the condition of 3 s on and 5 s off with 30% power of JY92-IIN (NingBoXinZhi, China). Finally, the protein solution was collected after centrifugation, and the concentration was measured by BCA protein quantification kit (Beyotime Biotechnology, China).
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6

Protein Expression Analysis in Cells

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Whole cells were lysed in cell lysate buffer (PMSF:RIPA=1:100, Beyotime, China), and protein concentrations were quantified with a BCA protein quantification kit (Beyotime, China). Proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Billerica, MA, USA). The membranes were blocked in fat-free milk and incubated with specific antibodies at 4 °C for 12 hours. The antibodies included anti-PHLPP2 (Abcam, USA), anti-CD133 (Proteintech, USA), anti-CD44 (CST, USA), anti-EPCAM (CST, USA), anti-Nrf2 (CST, USA), and anti-GAPDH (Hangzhou Xianzhi, China). Membranes were then incubated with secondary antibody (ZSGB-bio, China) and detected using a chemiluminescence system (Bio-Rad).
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7

Western Blot Analysis of Proteins

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Total proteins were extracted using RIPA buffer containing protease inhibitor cocktail (Roche, Basel, Switzerland). The concentrations of extracted proteins were determined using BCA Protein Quantification Kit (Beyotime, Shanghai, China). A total of 20 μg protein from each treatment was separated using 10% SDS-polyacrylamide gel electrophoresis (PAGE) and then transferred onto the polyvinylidene fluoride (PVDF) membranes. Then the membranes were incubated with primary antibodies against RAP1A, MMP9, vimentin, and GAPDH overnight at 4°C. anti-RAP1A (ab115776), anti-MMP9 (ab58803), anti-vimentin (ab137321), and anti-GAPDH (ab181603) were purchased from Abcam (Cambridge, MA, USA) and used at the following dilutions: anti-RAP1A (1:500), anti-MMP9 (1:500), anti-vimentin (1:500), and anti-GAPDH (1:1,000). After being incubated with horseradish peroxidase-labeled secondary antibody at 37°C for 1 hour, the blots were developed using the enhanced chemiluminescence detection system (Amersham, Buckinghamshire, UK),and the blots were quantified using Image J software (NIH, Bethesda, MD, USA).
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8

Western Blot Analysis of Cellular Signaling

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Cellular protein was lysed by radio immune precipitation assay (RIPA) buffer (Beyotime, China) with phenylmethane sulfonyl fluoride (PMSF) protease inhibitor (Beyotime, China) and the homogenate was centrifuged at 12,000 × g for 5 min at 4 C. The supernatant was collected and the protein concentration was determined immediately using a BCA protein quantification kit (Beyotime, China). The proteins were separated in 10% SDS-PAGE and transferred onto PVDF membrane, and then probed with antibodies following standard procedures. The antibodies and their dilutions utilized for western blots were as follow: anti-GHR (bs-0654R; Bioss, China; 1:500), anti-PGC1α (bs-1832R; Bioss, China; 1:500), anti-NRF1 (12,482–1-AP; Proteintech, USA; 1:500), anti-TOMM20 (AF1717; Beyotime, China; 1:500), anti-JAK2 (bs-0908R; Bioss, China; 1:1000), anti-p-JAK2 (bsm-52171R; Bioss, China; 1:1000), anti-AKT1 (bs-0115 M; Bioss, China; 1:500), anti-p-AKT1 (66,444–1-Ig; Proteintech, China; 1:500), anti-CREB1 (bs-0035R; Bioss, China; 1:500), anti-p-CREB1 (bs-0036R; Bioss, China; 1:500), anti-β-actin (bs-0061R; Bioss, China; 1:1000), goat anti-rabbit IgG-HRP (bs-0295G; Bioss, China; 1:5000), goat anti-mouse IgG-HRP (bs-0296G; Bioss, China; 1:5000).
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9

Examining SIRT3 and SOD2 Expression

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To confirmed the findings obtained from RT-PCR assay, Western blot assay was conducted to examine expressions of SIRT3 and SOD2. HSC/HPC cells were lysed with lysis buffer (Sigma-Aldrich), and the total proteins were extracted. The concentration of the proteins was examined using the BCA protein quantification kit (Beyotime Biotech, Shanghai, China). Equal amounts of protein were separated with 15% SDS-PAGE and electrotransferred onto PVDF membranes. Then, PVDF membranes were treated with 5% defatted milk for 4 h at 4°C. PVDF membranes were subsequently treated using rabbit anti-SIRT3 (cat. no: sc-99143), rabbit anti-SOD2 (cat. no. sc-30080), and rabbit anti-GAPDH (cat. no. sc-25778) for 2 h at 37°C. PVDF membranes were then treated using HRP-labeled anti-rabbit IgG (cat. no. sc-2030) for 60 min at 37°C. All of these primary and secondary antibodies were obtained from Santa Cruz Biotech. Eventually, Western blot images were visualized using the ECL Detection Kit (Pierce, Rockford, IL, USA). The Western blot assay was conducted at least 6 times in each group.
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10

Western Blot Analysis of EMT-related Proteins

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The transfected cells were lysed in protein lysis buffer (Beyotime Institute of Biotechnology, Nantong, Jiangsu, China) on ice for 30 min. The supernatants were collected after centrifugation for 15 min at 14,000 r/min and the concentration of the protein was calculated by the BCA Protein Quantification Kit (Beyotime Institute of Biotechnology). Proteins were separated by 10% SDS-PAGE gel and transferred onto a polyvinylidene difluoride membrane (Millipore, Billerica, MA, USA) in transfer buffer at 300 mA for 2 h. Then the membranes were incubated with Tris-buffered saline (TBS) containing 5% non-fat milk powder for 2 h at 4°C. The membranes were washed with TBS containing 0.2% Tween- 20 (TBST) three times, a nd then incubated with primary antibodies at 4°C overnight. Later, the membranes were washed with TBST three times and the specimens were hatched with secondary antibody in a secondary antibody solution for 2 h at room temperature. The indicated proteins were detected using a horseradish peroxidase chemiluminescent kit (Thermo Fisher Scientific) using an optional CCD camera and image processing system (Bio-Rad, Hercules, CA, USA). β-actin was used as a loading control. Moreover, N-cadherin, Vimentin, MMP9, AKT, phospho-AKT, mTOR, phospho-mTOR were bought from Cell Signaling Technology, Danvers, MA, USA. The secondary antibodies were also from Cell Signaling Technology.
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