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5 protocols using alcam

1

Immunohistochemical Antibody Panel

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ß-Actin (RRID: AB_626632; cl C-4;1:500; Santa Cruz, Heidelberg, Germany).
Fra-2 (RRID: AB_2107084; cl Q-20;1:200; Santa Cruz, Heidelberg, Germany).
HCAM (RRID: AB 627,066; CD44; cl F-4; 1:200; Santa Cruz, Heidelberg, Germany).
ICAM-1 (RRID: AB_627123; cl G-5; 1:250; Santa Cruz, Heidelberg, Germany).
Integrin β4 (RRID: AB_626839; G-7; sc-13127; 1:500; Santa Cruz, Heidelberg, Germany).
L1-CAM (cl UJ 127.11; 1:25; obtained from Altevogt Lab, Heidelberg, (Ebeling et al. 1996 (link))).
ALCAM (RRID: AB_868825; ab49496; 1:500; Abcam, Cambridge, United Kingdom).
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2

Antibody and Drug Validation Protocol

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The following primary antibodies were used: SPINK2 (#HPA026813, Atlas Antibodies, Stockholm, Sweden), SLC7A11 (#12691S, Cell Signaling Technology, Danvers, MA, USA), ALCAM (#ab109215, Abcam, Boston, WA, USA), β-Actin (#ab8266, Abcam) and GAPDH (#ab9485, Abcam).
The following drugs were used: Dimethyl sulfoxide (DMSO, #D4540, Sigma-Aldrich, Burlington, MA, USA), Nutlin-3a (#S8059, Selleckchem, Houston, TX, USA), erastin (#5499, Tocris, Bristol, UK), Puromycin (#A1113802, ThermoFisher, Waltham, MA, USA) and C26H19NO4 (#OSSK_987997, Princeton Biomolecular Research, Monmouth Junction, NJ, USA). The drugs were used at the concentrations indicated in the main text.
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3

Quantifying Key Proteins in Proteomics

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The key proteins, where clear differences were found during the proteome profiler measurements, were quantified using custom Human Magnetic Luminex Assay (CHI3L1, C5a, EGF, CD40L, VEGF, CRP, Il-17a, Osteopontin, Angiopoetin, IL-1RA, EMMPRIN, Lipocalin-2, Pentraxin-3, PDGF-AA, PDGF-BB) (R&D Systems Inc.) or ELISA assays (MPO, ALCAM, CD97, C1qR1, TGF-beta, Fibrinogen, Thrombospondin-1, CXCL-5) (Abcam, Cambridge, UK) (n = 8)
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4

Membrane Protein Fractionation and Western Blotting

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Cell extraction and western-blot were performed as previously described [33 (link)]. Incubation with primary antibodies was performed at 4°C overnight using 1:500 mAb ALCAM (MOG/07, Abcam, Cambridge, MA, USA); 1:2000 rAb a-Tubulin, 1:2000 rAb ERK1/2, 1:1000 rAb p-ERK1/2 (Cell Signaling Technology, Beverly, MA, USA), 1:2500 rAb Lamin (Santa Cruz, CA, USA), 1:5000 rAb mCherry ([57 (link)]; an aliquot of the antibody was kindly provided by Drs. Anna Santamaría and Erich A. Nigg). Nuclear, membrane and cytosolic fractionation of transfected Hec1A-ETV5 cells was performed by using a Subcellular Fractionation Kit (Pierce) as per the manufacturer's instructions.
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5

Protein Extraction and Western Blotting

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Total proteins were extracted using an NE-PER kit (Nuclear and Cytoplasmic Extraction Reagents, Thermo Fisher Scientific Inc.) according to the manufacturer’s protocol. Protein levels were normalized using a BCA kit (Thermo Fisher Scientific Inc.). SDS/PAGE conditions were 10 μl of protein loaded to a 10% gel run at 120 V for 90 min. For Western blotting, proteins were transferred to PVDF membranes and immunoblotted with primary antibodies against DLG5 (1:600), ALCAM (1:800), and β-actin (1:4000) (Abcam, Cambridge, MA, U.S.A.). The secondary antibody was horseradish peroxidase (HRP) conjugated goat anti-rabbit IgG (Jackson ImmunoResearch Laboratories, West Grove, PA, U.S.A., 1:5000).
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