The largest database of trusted experimental protocols

Ultrapure rna kit

Manufactured by CWBIO
Sourced in China, United States

The Ultrapure RNA Kit is a laboratory equipment designed to efficiently extract and purify high-quality RNA from a variety of sample types. It utilizes a straightforward column-based method to isolate total RNA with minimal contamination.

Automatically generated - may contain errors

248 protocols using ultrapure rna kit

1

Wheat Tillering Node RNA Extraction and qRT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA from the wheat tillering nodes was extracted using an Ultrapure RNA Kit (CWBIO, Jiangsu, China). The obtained RNA was reverse-transcribed into cDNA using the TransScript One-Step gDNA Removal and cDNA Synthesis SuperMix (TransGen Biotech, Beijing, China). ChamQ Universal SYBR qPCR Master Mix (Vazyme, Nanjing, China) was used for real-time fluorescence quantitative PCR, according to the manufacturer’s instructions. Quantitative primers were designed using WheatOmics (http://202.194.139.32/), and are described in detail in the Supplementary Table. Three replicates were established for each group of samples, and TaACTIN and AtACTIN were used as the internal reference gene for qRT-PCR. For Dn1, the tillering node is an important overwintering organ (Bao et al., 2021 (link)). Therefore, the tillering nodes of Dn1 under natural cooling conditions were selected for qRT-PCR. Relative expression levels were calculated using the 2 -ΔΔct method.
+ Open protocol
+ Expand
2

Quantifying ALDOA and miR-34a-5p Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Expression levels of ALDOA and other genes in HCC tissues and cells were measured using qRT-PCR according to the manufacturer's instructions (Yeasen, Shanghai, China). β-actin was used as a control. Primers are listed in Supplementary Table 1. Total RNA was extracted using an ultra-pure RNA kit (CWBIO, Beijing, China) and cDNA was synthesized using a HiScript II Q RT SuperMix for qPCR kit (Vazyme, Nanjing, China).
For miRNA quantification, Bulge-loop™ miRNA qRT-PCR primer sets (one RT primer and one pair of qRT-PCR primers per set) were designed by RiboBio (Guangzhou, China) specifically for miR-34a-5p. The cDNA was synthesized using the miRNA 1st Strand cDNA Synthesis Kit (Vazyme, Nanjing, China).
+ Open protocol
+ Expand
3

Quantification of miRNA and mRNA Expressions

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from the cortex of rats and HEK293 cells using the Ultrapure RNA Kit (CWBIO, Beijing, China). miRNA 1st Strand cDNA Synthesis Kit and miRNA Universal SYBR qPCR Master Mix (Vazyme, Nanjing, China) were used to measure the expression of DEMs in the 2VO rat model. Likewise, the DEGs in the rats with 2VO were also measured using Hiscript®III RT SuperMix for qPCR and ChamQ Universal SYBR qPCR Master Mix (Vazyme, Nanjing, China). Quantitative real-time polymerase chain reaction (qRT-PCR) analyses for miRNA and mRNA were performed following the manufacturer’s recommendations. The expression of miRNA and mRNA was calculated by the 2–ΔΔCT method (Yi et al., 2021 (link)). The primes in this study were synthesized from Sangon Biotech (Shanghai, China) and are listed in Table 1. U6 small RNA was used as the internal reference for miRNA. Gapdh and ACTB were used as the reference genes for mRNA.
+ Open protocol
+ Expand
4

Isolation and Quantification of Plant Total RNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA extracted from root tissues are different stages of development using an Ultrapure RNA Kit (CWBIO, CW0581M) according to manufacturer's instructions. Approximately 2 μg total RNA was reverse transcribed to cDNA with HiScript II Q RT SuperMix (Vazyme, R223-01) according to manufacturer's instructions. qPCR was performed as previously described (Zhang et al., 2012) , using rice Actin1 as an internal standard to normalize gene expression. The qPCR primers are listed in Supplemental Table S1.
+ Open protocol
+ Expand
5

Quantifying RGS4 Gene Expression by qRT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using the Ultrapure RNA Kit (CWBio, Beijing, China), and the extracted RNA was then used as the template for a reverse transcription with the First Strand cDNA Synthesis Kit (CWBio). The relative RGS4 expression level was determined in a qRT-PCR assay using the UltraSYBR Mixture (CWBio). Relative mRNA levels were calculated according to the 2−ΔΔCt method and were normalized to GAPDH levels. The following primers were used for qRT-PCR: RGS4-F (5′-GCC AAG AGG AAG TCA AGA AA-3′), RGS4-R (5′-CTT CAC AGC TGA TCC AGA AG-3′), and GAPDH-F (5′-CGG AGT CAA CGG ATT TGG TCG TAT-3′) and GAPDH-R (5′-AGC CTT CTC CAT GGT GA A GAC-3′).
+ Open protocol
+ Expand
6

Sucrose Consumption and Fluoxetine in BDNF

Check if the same lab product or an alternative is used in the 5 most similar protocols
In this study, sucrose (Amresco; 20140319) was employed in the sucrose consumption test, and fluoxetine (Eli Lilly and Company, Suzhou 215021, China; 4126A) was used as the standard control for acupuncture. ELISA Kit of BDNF (BlueGene Biotech CO., LTD., China; E02B0029) was used to detect the expression of BDNF in serum. The antibodies and some reagents used for WB analysis included rabbit polyclonal anti-BDNF (LifeSpan BioSciences; LS-C343943), rabbit polyclonal anti-acH3K9 (Cell Signaling Technology; 9649S), mouse anti-HDAC2 (Cell Signaling Technology; 5113S), β-actin (Zhongshanjinqiao Biotechnology Co., Ltd., Beijing, China; TA-09), goat anti-rabbit IgG (Jackson; 111-035-003), rabbit anti-H3 (Cell Signaling Technology, 4499S), ECL (Millipore; WBKLS0500), and bicinchoninic acid (BCA) protein assay kit (Cwbiotech; 02912E). Furthermore, the reagents used for RT-PCR and methylation-specific quantitative real-time PCR analysis included ultrapure RNA kit (Cwbiotech), HiFi-MMLV Reverse Transcriptase (Cwbiotech), SYBR Green PCR Mixture (Cwbiotech), and Dnase I (Cwbiotech), etc.
+ Open protocol
+ Expand
7

Quantitative Gene Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from 1×106 PBMCs using an ultrapure RNA kit (CW0597, cwbiotech, China). The RNA samples were reverse transcribed into cDNA using a Primescript™ RT Reagent Kit with gDNA Eraser (RR047A; Takara Biotechnology, Japan), strictly according to the protocols of the manufacturer. The relative expression levels of the target genes were determined using the -Delta Delta C(T) method after normalizing against the GADPH gene. The primers were showed at Supplementary Table 4.
+ Open protocol
+ Expand
8

Quantitative Analysis of miR-653-5p and MAPK6 in Breast Cancer Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA extracted from transfected MCF-7 and MDA-MB-231 cells with an Ultrapure RNA kit (CWBio) were reverse transcribed into cDNA at 42°C for 50 min and 85°C for 5 min with the miRNA cDNA Synthesis kit (CWBio), following the manufacturer's manual. RT-qPCR analysis was then performed following the instructions of the miRNA qPCR Assay kit (CWBio). The following thermocycling conditions were used for qPCR: Initial denaturation at 95°C for 10 min; followed by 40 cycles of 95°C for 15 sec and 60°C for 1 min; and final extension at 72°C for 50 sec. miR-653-5p and MAPK6 expression levels were calculated using the 2−∆∆Cq method (16 (link)) and normalized to the internal reference genes U6 and GAPDH, respectively. The following primers were used for qPCR: miR-653-5p forward, 5′-GTGTTGAAACAATCTCTACTG-3′ and reverse, 5′-GAACATGTCTGCGTATCTC-3′; U6 forward, 5′-CTCGCTTCGGCAGCACA-3′ and reverse, 5′-ACGCTTCACGAATTTGCGTGTC-3′; MAPK6 forward, 5′-AGCGCTAGAGGAAGCATCAC-3′ and reverse, 5′-GTGGGATGCCTATGGACTCG-3′; and GAPDH forward, 5′-TATGATGATATCAAGAGGGTAGT-3′ and reverse, 5′-TGTATCCAAACTCATTGTCATAC-3′.
+ Open protocol
+ Expand
9

RNA-seq Analysis of Maize Kernel Development

Check if the same lab product or an alternative is used in the 5 most similar protocols
For RNA-seq, three biological replicates of 12 DAP kernels were collected from six independent ears of B104 and zmmybr29 plants. Total RNA was extracted with the Trizol reagent (cat. no. 15596-026, Ambion) and an Ultrapure RNA Kit (CWBIO, Beijing, China). Library construction and sequencing were completed by Lianchuan (Beijing, China). The sequencing platform used was an Illumina NovaSeq™ 6000 with PE150 and double-end sequencing mode. The six samples generated a total of 43.2 Gb of raw data. We evaluated the raw data after downloading. The Q20 and Q30 values were over 99% and 98%, respectively. After removing adapters, filtering low-quality reads and other preprocessing steps, we obtained a total of 42.43 Gb of effective data. The genes were analyzed for differential expression using DESeq2 software (fold change ≥ 2, FDR < 0.05), accompanied by the removal of genes with low expression levels (TPM < 1).
+ Open protocol
+ Expand
10

Isolation and Characterization of Thermophilic Fungi

Check if the same lab product or an alternative is used in the 5 most similar protocols
Isolated thermophilic fungi grown at 37 °C in cellulose-containing medium and fresh stomach samples were used for RNA isolation. Total RNA was extracted using an Ultrapure RNA Kit (CWBIO, China) and reverse-transcribed using TransScript All-in-One First-Strand cDNA Synthesis SuperMix for PCR systems (TransGen Biotech, China) following the manufacturer’s protocol, and cDNA samples were used for PCR amplification. The PCR cycle was: 94 °C for 3 min; 30 cycles of 94 °C for 40 s, 52 °C for 40 s and 72 °C for 60 s; and 72 °C for 10 min for final extension. PCR products were purified using a Gel Extraction Kit (Omega Bio-Tek) and sequenced by Sangon Biotech, China. The primers used are shown in Additional file 1: Table S3.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!