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95 protocols using ab32518

1

Western Blot Analysis of Apoptosis and Signaling Pathways

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RIPA lysis buffer (Beyotime, Shanghai, China) supplemented with the protease inhibitors (Roche, Basel, Switzerland) to lysed cells. The equivalent amounts of protein (20 μg) was denatured at 100 °C in loading buffer for 15 min. Afterwards, load samples containing equal amount of proteins and prepared in sample buffer into 8–12% SDS/PAGE wells and transferred to PVDF membranes by voltage gradient transfer. The blots were blocked overnight in 5% nonfat milk. The membranes were incubated with the primary antibodies against Bcl-2 (ab32124), cleaved-Casapse-3 (ab49822), cleaved-Caspase-7 (ab32522), cleaved-Caspase-9 (ab52298), MMP-2 (ab37150), MMP-9 (ab73734), Vimentin (ab8978), MEK (ab32576), p-MEK (ab96379), ERK (ab32537), p-ERK (ab131438), p65 (ab16502), p-p65 (ab86299), IκBα (ab32518), p-IκBα (ab32518), and β-actin (ab8227) purchased from Abcam (Cambridge, UK) at the dilution of 1:1000. Incubate the membrane in primary antibody solutions overnight at 4 °C with gentle rocking. Wash the membrane with 1× TBST three times for 10 min and then incubate the membrane in the appropriate diluted secondary antibody (Abcam). Then the signal was captured and the intensity of the bands was analyzed. Finally result was quantified using Image Lab™ Software (Bio-Rad, Shanghai, China).
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2

Quantitative Western Blot Analysis of Cellular Proteins

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Monocytes were lysed by sonication and centrifuged for 3 min. The supernatant was collected, and the protein dose was estimated by a BCA The protein assay kit (ThermoFisher, China). Protein samples (20 µg) were electrophoretically separated by 10% SDS-PAGE and bolted to PVDF membranes. Before the blot was blotted against anti-CALR (RK-100-401-E99, 1:1000, Rockland, USA), anti-GAPDH (ab8245, 1:1000, Abcam, USA), anti-Flag (ab93713, 1:1000, Abcam, USA), or anti-IĸBa (ab32518, 1:1000, Abcam, USA) at a temperature of 4°C, the membranes were subjected to blockage with 2% nonfat dry milk at room temperature. The next day, anti-mouse IgG secondary antibodies (ab202646, 1:1000, Abcam, USA) were added, and the membranes were incubated at 37°C for 3 h. The signals were visualized with the help of an ECL Plus kit (Haimen, China).
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3

Brain Tissue Protein Analysis

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Total proteins in the brain tissues were extracted in RIPA lysis buffer (Beyotime), and the protein concentration was measured by a BCA protein concentration kit (Beyotime). The proteins were then separated by sodium dodecyl sulfate‐polyacrylamide gel electrophoresis and electro‐transferred onto the polyvinylidene difluoride membrane (Millipore). After being blocked with 5% skimmed milk for 1 h at room temperature, the membranes were firstly incubated with primary antibodies, including anti‐p‐IKKβ (1:500; ab194519; Abcam), anti‐IKKβ (1:1000; ab124957; Abcam), anti‐p‐IkBα (1:3000; ab133462; Abcam), anti‐IkBα (1:1000; ab32518; Abcam), anti‐NF‐κB p65 (1:1000; ab16502; Abcam), anti‐NF‐κB p‐p65 (S536) (1:500; ab86299; Abcam), anti‐Nrf2 (1:1000; ab62352; Abcam), anti‐HO‐1 (1:500; ab13248; Abcam), anti‐NQO1 (1:500; ab80588; Abcam), anti‐Histone 3 (1:1000; ab1791; Abcam), and anti‐β‐actin (1:1000; ab8226; Abcam), at 4℃ overnight and then with corresponding secondary antibodies (1:3000; Beyotime) at room temperature for 1 h. The blotted protein bands were visualized by an enhanced chemiluminescence kit (Beyotime, Shanghai, China). Image J software (NIH Image) was used to analyze the gray level of the bands.
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4

Subcellular Protein Extraction and Analysis

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Total proteins were extracted using RIPA buffer (50 mM Tris (pH 7.4), 1 mM EDTA, 150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate) supplemental with protease inhibitors (Roche). KeyGEN Nuclear and Cytoplasmic Protein Extraction Kit (KGP150, KeyGEN BioTECH) was used to isolate nuclear proteins. Antibodies against MCM3 (ab4460, Abcam), p65 (ab16502, Abcam), p84 (ab487, Abcam), IKKβ (ab124957, Abcam), p-IKKβ (ab38515, Abcam), IκBα (ab32518, Abcam), p-IκBα (ab133462, Abcam), DNA PKcs (ab32566), DNA PKcs (phosphor S2056) (ab18192), CLEAVED PARP1 (ab32064) and GAPDH (G8795, Sigma).
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5

Western Blot Analysis of Cell Signaling

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Immunoblotting analysis was conducted as previously described.17 (link) The antibodies used in these analyses included anti-RIP1 (ab72139, 1:1,000; Abcam, Cambridge, UK), anti-IκBα (ab32518, 1:1,000; Abcam), anti-phospho-IκBα (ab133462, 1:10,000; Abcam), anti-VEGF-C (ab9546, 1:1,000; Abcam), anti-TAK1 (sc-7967, 1:1,000; Santa Cruz Biotechnology Inc., Dallas, TX, USA), anti-NEMO (ab97642, Abcam, 1:1,000), and anti-GAPDH (ab8245, 1:1,000; Abcam). The detected proteins were semiquantified relative to GAPDH expression in each gel.
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6

Hippocampal BDNF-TrkB Signaling Pathway

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Hippocampal tissue samples were collected, and protein lysis solution (RIPA) was used for lysing tissues on ice for 30 minutes to extract proteins. After protein quantification, 10% SDS-PAGE was performed, and the protein on the gel was transferred to a PVDF membrane by the wet transfer method. After blocking the PVDF membrane with blocking solution for 2 hours at room temperature, rabbit monoclonal antibody BDNF (1:1,000, ab108319), rabbit monoclonal antibody TrkB (1:1,500, ab18741), rabbit monoclonal antibody p-IKKβ (1:1,000, ab38515), rabbit monoclonal antibody IKKβ (1:1,000, ab124957), rabbit monoclonal antibody IκBα (1:1,000, ab32518), rabbit polyclonal antibody NF-κB p65 (1:1,500, ab16502), and rabbit polyclonal antibody GAPDH (1:1,000, ab9485, Abcam, Cambridge, UK) were applied and incubated overnight at 4 °C. The next day, membranes were washed with PBST for 30 minutes, then incubated with an HRP-labeled secondary antibody at 37 °C for 1 hour, and the membrane was washed with PBST for 1 hour. Finally, the target protein was detected using the enhanced chemiluminescence ECL kit, and the gray value was analyzed by Image J software.
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7

Western Blot Analysis of NFAT and NF-κB Signaling

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The brain tissues were added with pre-cooled Tris-HCl buffer (pH 7.4) at the ratio of 1:3, and made into brain tissue homogenate with a glass homogenizer in an ice bath, and then the cells or tissue homogenates were lysed in cold RIPA containing a protease inhibitor cocktail [50 mM Tris (pH 7.4), 150 mM NaCl, 1% NP-40, 0.1% SDS, 1 mM PMSF, 1 mM NaF, 1 mM Na3VO4, 1% protease inhibitor cocktail from Sigma, which was added right before use], for 30 min. The lysate was then centrifuged at 4°C for 20 min at 16,000 × g to collect the supernatant. The protein concentration was determined using the Pierce bicinchoninic acid assay kit (Beyotime Biotechnology Co., Ltd.). Equal amounts of protein (20 μ.l/well) were separated by 7.5% SDS-polyacrylamide gel electrophoresis and transferred onto polyvinylidene difluoride membranes. The membranes were blocked with 5% skimmed milk for 1 h and incubated overnight at 4°C with primary antibodies as follows: Recombinant nuclear factor of activated T cells c2 (NFATc2) (1:1,000, ab2722; Abcam), p65 (1:1,000, ab16502; Abcam), p-p65 (1:2,000, ab86299; Abcam), IκBα (1:1,000, ab32518; Abcam), and p-IκBα (1:10,000, ab133462; Abcam). The membranes were then incubated with secondary antibody IgG (1:2,000, ab205718; Abcam). The gray value of the target band was analyzed using ImageJ software (Rawak Software, Inc.) with β-actin as the internal reference.
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8

Protein Expression Profiling in Neuroinflammation

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Through the previously described method [26 (link)], Western blot assay was conducted. The BV2 cells and mouse spinal cord tissues were gathered, and the total proteins were extracted from them using RIPA lysis buffer (Thermo Fisher Scientific, MA). A total of 25 μg proteins were separated through 10% sodium dodecyl sulfate‐polyacrylamide gel electrophoresis (SDS‐PAGE) and were transferred into the PVDF membranes (Thermo Fisher Scientific, MA). The membranes were then blocked with 5% skim milk and were incubated with the primary antibodies: anti‐ED‐1 (Grbio), anti‐iNOS (ab178945, 1:1000, Abcam), anti‐β‐actin (ab8226, 1 μg/ml, Abcam), anti‐p50 (ab133492, 1:1000, Abcam), anti‐p65 (ab16502, 0.5 μg/ml, Abcam), anti‐p‐p65 (ab183559, 1:1000, Abcam), anti‐A20 (orb159784, 1:1000, Biorbyt), anti‐HuR (ab200342, 1:1000, Abcam), and anti‐IκBα (ab32518, 1:1000, Abcam) overnight at 4°C. The membranes were then incubated with the secondary antibody (ab205718, 1:2000, Abcam) at room temperature for approximately 1 h. ECL Chemiluminescence Kit (Thermo Fisher Scientific, MA) was applied to visualize all the proteins.
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9

Protein Profiling in Brain and Lung Tissues

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Proteins in the brain tissues and lung tissues were harvested by a RIPA buffer (P0013D, Beyotime, China) and their concentrations were qualified with a BCA Kit (pc0020, Solarbio, China). After denaturation, the protein samples were separated by electrophoresis. Proteins in the gel were transferred to a nitrocellulose membrane (10600023, GE Healthcare Life, USA), which was then sealed a 5% skim-milk. After that, they were reacted with primary antibodies at 4 °C overnight. After washing, they were reacted with anti-rabbit HRP (1:5000, #7074, CST, USA) at 37 °C for 1 h. In the end, the protein signals were developed by the ECL reagent (35055, Pierce, USA) in a gel imaging system (A44114, Invitrogen, USA). The primary antibodies of TNF-α (ab205587, 1:1000), IL-1β (ab254360, 1:1000), p-NF-κB (ab76302, 1:1000), NF-κB (1:5000, ab32536), p-IKBα (1:10,000, ab133462), IKBα (1:5000, ab32518), HIF-1α (1:1000, ab179483), and GAPDH (1:5000, ab199554) were obtained from Abcam (UK).
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10

Western Blot Analysis of Protein Expression

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Total cell lysate was extracted using radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime Biotechnology). Approximately 30 µg of protein was separated by 10% SDS-PAGE and transferred onto a polyvinylidene fluoride (PVDF) membrane. After blocking with 5% skimmed milk, the membranes were incubated overnight with primary antibodies against CEP55 (Abcam, ab170414), MMP2 (Abcam, ab37150), MMP9 (Abcam, ab38898), Cyclin D1 (Abcam, ab134175), p-IKKβ (Abcam, ab59195), IKKβ (Abcam, ab32135) and IκBα (Abcam, ab32518), followed by incubation with secondary antibodies. Human α-tubulin (Abcam, ab7291) or GAPDH (Abcam, ab8245) were used as the endogenous references, according to the details. Immunoreactive protein bands were visualised using the ECL method (Invitrogen), according to the manufacturer’s recommendations.
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