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12 protocols using df7504

1

Quantitative Analysis of Tight Junction Proteins

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The total protein was extracted from ilea and then quantitated using BCA Protein Assay kit. Equal amounts of protein (20 μg) from different samples were separated by 6∼15% SDS-PAGE and transferred to PVDF membranes. The membranes were blocked with 5% skimmed milk for 4 h at room temperature, then probed with ZO-1 (1:1,000, AF5145, Affinity), claudin-1 (1:1,000, AF0127, Affinity), occludin (1:1,000, DF7504, Affinity), p65 (1:1,000, AF5002, Affinity), MLCK (1:1,000, AF5314, Affinity), MLC2 (1:1,000, 36725, CST), and β-actin (1:3,000, ab8226, Abcam) was used as loading control, overnight at 4°C and with secondary antibody at RT for 1 h. The images were captured using ChemiDoc MP imaging system (Bio-Rad).
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2

Western Blot Analysis of Signaling Proteins

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The snap-frozen tissues were subjected to homogenization in 250μL of lysis buffer as previously described. Samples (30 μg of protein for each condition) were transferred onto PVDF membranes and then incubated with antibodies (Li et al., 2017 (link)). The following were used as primary antibodies: caspase 3 (ab323519, Abcam), myeloid differentiation factor 88 (MyD88) (SC74532, Santa Cruz), toll-like receptor 4 (TLR4) (AF7017, Affinity), ZO-1 (AF 5145, Affinity), occludin (DF7504, Affinity), and NF-κB(ab16502, Abcam). Immunoreactive bands were revealed using a 1:10,000 dilution of secondary antibody conjugated to horseradish peroxidase (goat anti-rabbit IgG, BE0101, Bioeasy; goat anti-mice IgG, BE0102, Bioeasy). The blots were re-probed with antibodies against β-actin (EASYBIO) and GAPDH (Bioworld) to ensure equal loading and transfer of proteins. All critical blots and immunoprecipitation experiments were repeated at least three times.
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3

Lung Tight Junction Protein Quantification

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The content changes of claudin-5, occludin, E-cadherin, and VE-cadherin proteins were determined in the lung tissues by Western blotting (WB). The right lung was divided into upper, middle, and lower lobes, according to the anatomical structure. The average value of the upper, middle, and lower lobes of lung was taken to compare the protein content in the whole lung between the groups. Lung tissues were homogenized, and 30 g of protein was electrophoresed. Membranes were exposed overnight at 4°C to the E-cadherin antibody (1:1,000; 610181; BD Transduction Laboratories™), VE-cadherin antibody (1:1,000; ab33168; Abcam), occludin antibody (1:1,000; DF7504; Affinity), and claudin-5 antibody (1:500; AF5216; Affinity). Anti-GAPDH antibody (1:1,000; BX008; BioX) was used as the loading control. Immunohistochemistry staining of E-cadherin and VE-cadherin was performed according to the manufacturer’s recommendations.
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4

Inflammatory Biomarkers Quantification Protocol

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The amylase (MM-1018M1) and lipase (MM-1157M1) enzyme-linked immunosorbent assay (ELISA) kits were purchased from Jiangsu MMBio Industry Co., Ltd (Yancheng, China). Tumor necrosis factor-α (TNF-α) (KE10002), IL-1β (KE10003) and IL-6 (KE10007) ELISA kits were purchased from Proteintech Group. Primary antibodies against the following proteins were purchased: rabbit anti-occludin (df7504, Affinity, 1/1000), rabbit anti-ZO-1 (af5145, Affinity, 1/500), rabbit anti-claudin-4 (af5350, Affinity, 1/500), rabbit anti-ASC (bs-6741R, Bioss, 1/500), rabbit anti-NLRP3 (bs-10021R, Bioss, 1/500) and rabbit anti-caspase1 (22915-1-ap, Proteintech, 1/500).
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5

Immunohistochemical Analysis of Tight Junction Proteins

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The paraffin sections were recovered by heating to 98°C in 10 mM citrate buffer (pH 6.0) for 10 min. Endogenous peroxidase was blocked with 10% (v/v) H2O2 for 30 min. Non-specific antigens were blocked with serum at room temperature (20–25 °C) for 30 min. The paraffin sections were incubated with rabbit anti-occludin (1:100; DF7504; Affinity Biosciences Ltd., Liyang, China), rabbit anti-claudin-1 (1:100; AF0127; Affinity Biosciences Ltd., Liyang, China), and rabbit anti-ZO-1 (1:100; AF5145; Affinity Biosciences Ltd., Liyang, China) primary antibodies at 4 °C overnight and then treated with horseradish peroxidase (HRP)-conjugated goat anti-rabbit IgG secondary antibodies (1:200; GB23303; Wuhan Servicebio Technology Co., Ltd., Wuhan, China). Photographic images were acquired under an OLYMPUS microscope and analyzed with ImagePro Plus software (Media Cybernetics, Rockville, MD, United States).
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6

Western Blot Analysis of Oxidative Stress

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Tissue and cell lysates were separated, transferred to 0.45 μm PVDF membranes (Millipore, America), blocked and incubated in primary antibodies (metallothionein 2, MT2, 1 : 200, Immunoclone, America, ICA868Hu01). BCL2(1 : 1000, 15071), cleaved-caspase 3 (1 : 1000, 9661S), SOD2(1 : 1000, 13194), CAT (1 : 1000, 12980) (CST, America). cytochrome C (1 : 500, Abcam, Britain, ab133504). Bax (1 : 1000, 60267-1-Ig), VDAC1(1 : 1000, 66345-1-Ig) (Proteintech, Wuhan, China), malondialdehyde (MDA) (1 : 1000, Novus, America, NBP2-59366). claudin 5 (1 : 1000, #AF5216), ZO1 (1 : 1000, #AF5145), occludin (1 : 1000, #DF7504) (Affinity, Jiangsu, China), and β-actin (1 : 800, Boster, Wuhan, China, BA2305), and followed by incubation in HRP-conjugated secondary antibodies (Proteintech, Wuhan, China, SA00001-1 and SA00001-2). The membranes were visualized by the ECL system (Thermo, America, 32132), and the quantification of the band intensity were calculated by the ImageJ software [14 , 15 (link)].
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7

Immunostaining Analysis of Intestinal Markers

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Immunohistochemistry and immunofluorescence assay was used to identify the expression of E-cadherin, occludin, ZO-1, and MUC2. Paraffin-embedded colon sections were dewaxed and rehydrated before blocking to avoid endogenous peroxidase activity by 3% H2O2. For immunohistochemistry detection, colonic sections were incubated with primary antibodies against E-cadherin (Affinity, AF5145), occludin (Affinity, DF7504), ZO-1 (Affinity, AF5145), and MUC2 (Affinity, DF8390) overnight at 4°C, followed by incubating with streptavidin-horseradish peroxidase. The images were captured with a biological microscope (Olympus, CX21FS1). For immunofluorescent detection, the slices were treated overnight at 4°C with primary antibodies E-cadherin, occludin, and ZO-1. After washing with PBS three times to remove the extensive antibodies, the sections were incubated with secondary antibodies in the dark for an hour at room temperature. Lastly, the slides were incubated with DAPI solution (Wuhan Google Biotechnology Co., Ltd.), covered with a mounting medium, and examined under a fluorescence microscope (Nikon, Japan).
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8

Tight Junction Protein Analysis

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The protein concentration was quantified using a bicinchoninic acid (BCA) protein assay kit, and the samples were supplemented with loading buffer for western blot analysis. The proteins were separated by SDS-PAGE and subsequently transferred to PVDF membranes. After 1 h of blocking, the membranes were then incubated overnight at 4°C with specific primary antibodies, including anti-Claudin-1 (1:500; Ab15098; Abcam), anti-Occludin (1:1,000; Df7504; Affinity), ZO-1 (1:1000; Af5145; Affinity), and anti-β-actin (BM0627). Then the samples were incubated with the appropriate secondary antibody at room temperature for 1 h. Following the removal of the secondary antibody by washing, the protein bands were visualized using an ECL hypersensitive luminescent solution (Thermo Fisher, United States).
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9

Rat model of blood-brain barrier dysfunction

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JFG (0012007009) was bought from Shandong New Times Pharmaceutical Co., Ltd. Primary antibodies of anti-β-actin (GB12001, Servicebio, Wuhan, China), anti-GAPDH (GB12002, Servicebio, Wuhan, China), anti-MMP9 (GB11132, Servicebio, Wuhan, China), anti-PI3K (GB11525, Servicebio, Wuhan, China), anti-AKT (GB13427, Servicebio, Wuhan, China), anti-p-AKT (AF0016, Affinity Biosciences, USA), anti-IL-1β (AF5103, Affinity Biosciences, USA), anti-Occludin (DF7504, Affinity Biosciences, USA), anti-Claudin-5 (AF5216, Affinity Biosciences, USA), and anti-TNF-α (GB11188, Servicebio, Wuhan, China). Evans Blue (CAS: 314-13-6) was purchased from Bioengineering (Shanghai) Co., Ltd. (Shanghai, China). The Collagenase IV (C8160) and rabbit fluorescein conjugated antibody were purchased from Servicebio (Wuhan, China). Adult male rats (Sprague-Dawley rat, 300 ± 20 g) were purchased from Pengyue Laboratory Animal Breeding Co., Ltd. (Jinan, Shandong, China).
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10

Immunofluorescence of Brain Tissue

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Brain tissues were fixed and then stabilized in 0.5% Triton X-100. After blocking with blocking buffer, the tissues were incubated with occludin (DF7504, Affinity, Jiangsu, China), LC3 (AF5402, Affinity, Jiangsu, China), and zonula occludens-1 (ZO-1) (21773-1-AP, proteintech, Shanghai, China) overnight at 4 °C. The tissues were then incubated with an anti-rabbit antibody and counterstained with DAPI. The cells were observed under a microscope.
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