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Absolute quantification program

Manufactured by Thermo Fisher Scientific

The Absolute quantification program is a software tool developed by Thermo Fisher Scientific. It provides a method for determining the absolute quantification of target analytes in samples through data analysis. The program enables users to quantify the concentration of specific molecules or proteins in their samples with precision.

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3 protocols using absolute quantification program

1

Quantifying Leptospiral Burden via qPCR

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The leptospiral burden in blood and urine was determined by quantitative real-time PCR (qPCR), as described [40 (link)]. The Maxwell 16 automat was used to extract total DNA from 50 μl of blood and from a drop of urine, using the Maxwell blood DNA and cell LEV DNA purification kits (Promega), respectively. Primers and probe designed in the lpxA gene of L. interrogans strain Fiocruz L1-130 [4 (link)] were used to specifically detect pathogenic Leptospira spp. [40 (link)]. qPCR reactions were run on a Step one Plus real-time PCR apparatus using the absolute quantification program (Applied Biosystems), with the following conditions for FAM TAMRA probes: 50°C for 2 min, 95°C for 10 min, followed by 40 cycles with denaturation at 95°C for 15 s and annealing temperature 60°C for 1 min, according to the manufacturer’s instructions.
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2

Quantitative Detection of Pathogenic Leptospira

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The leptospiral load in blood, urine and organs was determined by quantitative real-time PCR (qPCR), as described (22 (link)). Total DNA from blood and urine (around 50 μL) was extracted using a Maxwell 16 automat with the Maxwell blood DNA and cell LEV DNA purification kits (Promega), respectively. DNA was extracted with the QIAamp DNA kit (Qiagen) from organs mechanically disrupted for 3 min at 4°C with metal beads using an automat (Labomodern). Primers and probe designed in the lpxA gene of L. interrogans strain Fiocruz L1-130 (4 (link)) were used to specifically detect pathogenic Leptospira sp. (22 (link)), using the nidogen gene for normalization in kidneys. qPCR reactions were run on a Step one Plus real-time PCR apparatus using the absolute quantification program (Applied Biosystems), with the following conditions for FAM-TAMRA probes: 50°C for 2 min, 95°C for 10 min, followed by 40 cycles with denaturation at 95°C for 15 s and annealing temperature 60°C for 1 min.
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3

Quantifying Leptospira Infection by qPCR

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The leptospiral load in blood, urine and organs was determined by quantitative real-time PCR (qPCR), as described [22] . Total DNA from blood and urine (around 50 µL) was extracted using a Maxwell 16 automat with the Maxwell blood DNA and cell LEV DNA purification kits (Promega), respectively. DNA was extracted with the QIAamp DNA kit (Qiagen) from organs mechanically disrupted for 3 min at 4°C with metal beads using an automat (Labomodern). Primers and probe designed in the lpxA Leptospira sp. [22] , using the nidogen gene for normalization in kidneys. qPCR reactions were run on a Step one Plus real-time PCR apparatus using the absolute quantification program (Applied Biosystems), with the following conditions for FAM-TAMRA probes: 50 °C for 2 min, 95 °C for 10 min, followed by 40 cycles with denaturation at 95 °C for 15 s and annealing temperature 60 °C for 1 min.
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