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HepG2 is a well-characterized hepatocellular carcinoma cell line derived from human liver. This cell line is commonly used in various research applications, including studies on liver function, drug metabolism, and toxicology.

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9 protocols using hepg2

1

Culturing Human Liver Cell Lines

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The human normal liver cell line, THLE-2, was obtained from Shanghai Academy of Life Science (Shanghai, China). Human hepatoblastoma cell line HepG2 (catalog No. ZQ0022), human HCC cell lines, (HCCLM3 (catalog No. ZQ0023), Hep3B (catalog No. ZQ0024), and Huh7 (catalog No. ZQ0025) were purchased from Zhong Qiao Xin Zhou Biotechnology (Shanghai, China). All cell lines were inoculated into culture dishes and added to Dulbecco’s Modified Eagle’s Medium (DMEM) containing 10% fetal bovine serum (FBS) to maintain growth. The cell culture medium was also supplemented with 1% penicillin/streptomycin. The growth environment temperature was maintained at 37 °C with 5% CO2. The culture dishes were purchased from Guangzhou Jet Biofiltration (Guangzhou, China). FBS, and penicillin/streptomycin were purchased from BI (BI, Ridgefield, CT, USA).
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2

Hepatoma Cell Culture and MC-LR Exposure

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The human hepatoma cell line HepG2 and SMMC-7721 were purchased from Zhongqiao Xinzhou Biotechnology Co., Ltd. and Biowing Biotechnology, Co., Ltd., respectively (Shanghai, China). These cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM; Gibco, United States) supplemented with 10% fetal bovine serum (FBS; Gibco, United States), 100 μg/mL streptomycin (Hyclone, United States), and 100 U/mL penicillin (Hyclone, United States) in a humidified incubator with 5% CO2 at 37°C. Details of the cell genetic quality identification test report were shown in Supplementary Files 1, 2. MC-LR (purity > 95%) was purchased from the Beijing Solarbio Science & Technology, Co., Ltd., Beijing, it was dissolved in complete DMEM medium to a storage concentration of 100 μM, stock at −20°C until use.
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3

Cell Culture Conditions for Liver Cancer

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LO2, HepG2, Hep3B, MHCC97H, and HCCLM3 cell lines were sourced from Shanghai Zhong Qiao Xin Zhou Biotechnology Co. Ltd. HEK293T cells were stored in the central laboratory of our hospital, Guangzhou, China. The cells were cultured in a DMEM medium containing 10% fetal bovine serum at 5% CO2 and 37 °C.
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4

Overexpression and Knockdown of AHSA1 in Liver Cancer Cells

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The HCC cell lines PLC/PRF/5, HCCLM3, Huh-7, Hep3B, and HepG2, and the control liver epithelial cell line LO2 were purchased from Zhong Qiao Xin Zhou Biotechnology (Shanghai, China). The cells were inoculated into culture dishes purchased from Guangzhou Jet Biofiltration (Guangzhou, China) and added to Dulbecco’s Modified Eagle’s Medium (DMEM) containing 10% fetal bovine serum to maintain growth. The growth environment temperature was maintained at 37 °C with 5% CO2. The overexpression plasmid pcDNA3.1-AHSA1, empty vector pcDNA3.1, shRNAs targeting AHSA1, and sh-control were purchased from OBiO Technology (Shanghai, China). The sequences of shRNAs targeting AHSA1 and sh-control were as follows: sh-AHSA1-1, GCATGATCTTACCTACAAT; sh-AHSA1-2, CCATCACCTTGACCTTCAT; sh-control, CCTAAGGTTAAGTCGCCCTCG. The siRNAs targeting CALD1 and si-NC were obtained from RIBOBIO (Guangzhou, China). The sequences of siRNAs targeting CALD1 were as follows: si-CALD1-1, AGAGCTTCATGGATCGAAA; si-CALD1-2, GTACGCAACATCAAGA GTA; si-CALD1-3, GAAGGAGTTCGACCCAACA. Lipofectamine 3000 (Thermo Scientific, Waltham, MA, USA) was used for conventional cell transfection for 72 h. AHSA1 expression was detected by western blotting.
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5

Expression Analysis of CCDC45 in Liver and Lung Cancer

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A human normal hepatic epithelial cell line (LO2) and human lung cancer cell lines (HepG2, Hep3B, 97H, and LM3) were purchased from Shanghai Zhongqiao Xinzhou Biotechnology Co., and cultured in Dulbecco's Modified Eagle's Medium (DMEM; Gibco, Grand Island, NY, USA).
Total RNA was routinely extracted after adding TRIzol reagent (Invitrogen, Thermo Fisher Scientific, Shanghai, China) to the cells, and the RNA concentration was determined. cDNA was synthesized and analyzed by qRT-PCR using SYBR® Green (Roche, Basel, Switzerland) [24 (link)]. The PCR conditions were 95°C for 10 minutes, 95°C for 15 seconds, and 60°C for 30 seconds for 40 cycles. GAPDH was used as the internal control, and the relative changes between two groups were analyzed by the 2-ΔΔCt method. The following primers were used for qRT-PCR: CCDC45 forward, 5′-AAAAGCCTTAGCCTCACCAAG-3′; CCDC45 reverse, 5′-CTCCCCTAGCTTCCTAGCATT-3′; GAPDH forward, 5′-ATCTTCCAGGAGCGAGATCC-3′; and GAPDH reverse, 3′-ACCACTGACACGTTGGCAGT-5′.
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6

Establishing Stable Cell Lines for FEN1 Studies

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SK-HEP1(catalog number, #ZQ0030), HepG2 (#ZQ0022), Hep3B (#ZQ0024), Huh7 (#ZQ0025), SMMC-7721 (#ZQ0029), HCCLM3 (#ZQ0023), and LO2 (#ZQ0031) were purchased from Zhong Qiao Xin Zhou Biotechnology (Shanghai, China). The cells were cultured in Dulbecco's modified Eagle's medium (DMEM, Hyclone, CA, USA) or RIPM1640 medium supplemented with fetal bovine serum (FBS; Gibco, CA, USA) and penicillin/streptomycin at 37 °C under the condition of 5% CO2. Human FEN1 cDNA was amplified by PCR and cloned into the pTSB02-GFP-PURO vector constructed by Transheep (Shanghai, China). siRNA Smartpool targeting FEN1 was designed and constructed by Dharmocon (NY, USA). Plasmids or siRNAs were transfected with Lipofectamine 3000 reagent (Invitrogen, CA, USA) according to the manufacturer's instructions. Cells transfected with pTSB02-GFP-PURO plasmids were selected with puromycin (5 μg/mL, Sigma-Aldrich, CA, USA) for 30 days to obtain stably transfected cells.
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7

Cell Lines and Culture Conditions

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The HEK-293T cell line and 7 HCC cell lines (MHCC97H, Hep3B, HepG2, HCCLM3, Huh 7, PLC/PRF/5, and SK-Hep-1) were used in this study. HCCLM3 and MHCC97H were generated on the same genetic background and established at the Liver Cancer Institute of the Zhongshan Hospital of Fudan University. HepG2 (ZQ0022), Huh 7 (ZQ0025), PLC/PRF/5 (ZQ0027), and SK-Hep-1 (ZQ0030) were purchased from the Shanghai Zhong Qiao Xin Zhou Biotechnology Co. Ltd. All cell lines were maintained in high-glucose DMEM supplemented with 10% FBS, 100 U/mL penicillin, and streptomycin. Hep3B cells were maintained in MEM containing the same supplements listed above.
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8

Human Hepatocellular Carcinoma Cell Lines

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The human HCC cell lines HepG2, Hep3B, Huh7, and HCCLM3 were purchased from Zhong Qiao Xin Zhou Biotechnology (ShangHai, China). The HepG2, Huh7, and HCCLM3 cells were cultured in Dulbecco's modified Eagle medium (DMEM, Gibco, USA), and the Hep3B cells were cultured in minimum essential medium (MEM, Gibco, USA). All the media were supplemented with 10% fetal bovine serum (FBS, A0500-3011, Cegrogen Biotech, Germany) and 1% penicillin-streptomycin (Meilunbio, China), and the cells were cultured at 37°C in a 5% CO2 air atmosphere.
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9

EFNA4 and Hepatocellular Carcinoma Cell Lines

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The HCC cell lines Hep G2, Hep 3B, Huh7, and MHCC-97H, as well as normal hepatic epithelial cell line (LO2), were obtained from Zhong Qiao Xin Zhou Biotechnology (Shanghai, China). All cells were cultured in cell culture dishes (Guangzhou Jet Bio-Filtration, Guangzhou, China) and maintained in Dulbecco’s modified Eagle’s medium (DMEM), supplemented with 10% (v/v) fetal bovine serum and 5 mg/mL penicillin/streptomycin at 37°C with 5% CO2. EFNA4-targeting siRNA and scramble control siRNA were purchased from RiboBio (Guangzhou, China). EFNA4-targeting sequences were as follows: siRNA #1, 5′-GGGCCTCAACGATTACCTA-3′; siRNA #2, 5′-GGAGAGACTTACTACTACA-3′. PIK3R2-targeting sequences were as follows: siRNA #1, 5′-GCACCTATGTGGAGTTCCT-3′; siRNA #2, 5′-GGCCAGACTCAAGAGAAAT-3′. β-catenin-targeting sequences were as follows: siRNA #1, 5′-GCCACAAGATTACAAGAAA-3′; siRNA #2, 5′-GACTACCAGTTGTGGTTAA-3′. The overexpression plasmids pcDNA3.1-EFNA4 as well as the empty vector (pcDNA3.1) were obtained from Sino Biological (Beijing, China). Cell transfection was performed using Lipofectamine 3000 (Thermo Scientific, Waltham, MA, USA) according to the instructions provided by the manufacturer. The expression level of EFNA4 was detected by quantitative real-time PCR.
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