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Eclipse ti inverted microscope

Manufactured by Oxford Instruments

The Eclipse Ti inverted microscope is a high-performance imaging system designed for a variety of microscopy applications. It features a stable inverted design, advanced optics, and integrated control software. The Eclipse Ti provides researchers with a versatile platform for exploring samples and capturing detailed images.

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11 protocols using eclipse ti inverted microscope

1

Optogenetic Control of PI3K Signaling

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Hardware used for the experiments included an Eclipse Ti inverted microscope equipped with a motorized laser TIRF illumination unit, a Borealis beam-conditioning unit (Andor Technology), a 60× Plan Apochromat TIRF 1.49 NA objective (Nikon), an iXon Ultra electron-multiplying charge-coupled device camera, and a laser merge module (LMM5; Spectral Applied Research) equipped with 405-, 488-, 561-, and 640-nm laser lines. All hardware was controlled using Micro-Manager [36 ,38 ] (University of California, San Francisco), and all experiments were performed at 37°C and 5%CO2.
Activity of opto-PI3K was controlled via a 470-nm (blue) LED (Lightspeed Technologies) that transmitted light through a custom DMD (Andor Technology) at varying intensities by connecting the LEDs to the analog outputs of a digital-to-analogue converter and setting the LED voltages using serial commands via custom Python code. Our microscope is equipped with two stacked dichroic turrets such that samples can be simultaneously illuminated with LEDs using a 488-nm longpass dichroic filter (Chroma Technology) in the upper turret while also placing the appropriate dichroic (Chroma Technology) in the lower turret for TIRF microscopy.
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2

3D-SIM Imaging Using Nikon N-SIM

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Structured illumination microscopy (SIM) was performed with a Nikon N-SIM based
on an Eclipse Ti inverted microscope using an SR Apo-TIRF × 100/1.49
oil-immersion objective and an Andor iXon 3 EMCCD camera. Images were acquired
in 3D-SIM mode using excitation at 488 nm and 561 nm and standard
filter sets for green and red emission. Image z-stacks were collected with a z
interval of 125 nm. SIM image reconstruction, channel alignment and 3D
reconstruction were performed using NIS-Elements AR software.
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3

Phagosome Maturation Imaging Assay

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Simultaneous imaging of events of phagosome maturation was done using a Nikon Eclipse-Ti inverted microscope equipped with a 1.49 N.A. ×100 TIRF objective and an Andor iXon3 EMCCD camera. RAW264.7 cells were used in magnetic tweezers experiments and control experiments. In FRET-fusion assays, lysosomes were labelled by incubating macrophage cells with biotin-BSA-Alexa 647 in full DMEM overnight followed by a 2h chasing period.
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4

Live Imaging of Autophagic Flux

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RPE PLK4 WT and ΔC cells were transfected with pGFP-LC3 (Addgene; plasmid #21073) using Mirius LT1 transfection reagent (Mirius Bio), plated on the cover slip of 35mm dishes (MatTek), and treated with 2 μg/mL doxycycline for 24 hours (if indicated). Live imaging of autophagosome traffic and autophagic flux was performed as previously described (27 (link)). Live, transfected cells were rapidly imaged (2000ms per Z-stack, 50 times) using: the Revolution XD spinning-disk microscopy system equipped with Yokogawa CSU-X1 confocal spinning disk head; Nikon Eclipse Ti inverted microscope surrounded by an Okolab cage incubator; iXon x3 897 EM-CCD camera; Andor laser combiner with four solid-state lasers at 405, 488, 561 and 640 nm and corresponding band-pass filter sets (Sutter); and ASI motorized stage with piezo-Z for rapid Z-stack acquisition as previously described (27 (link),28 (link)). Andor IQ2 software was used for image acquisition and Imaris X64 (Bitplane) for image analysis. Spots module was used to obtain speed and track displacement length of autophagosomes.
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5

Microscopic Imaging of Yeast Growth

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Strains were grown overnight in synthetic complete -uracil (SC-URA) medium with 2% dextrose, then diluted to an OD600 of 0.1 in SC-URA + 2% dextrose and grown to an OD of 0.4–0.5. Images were taken on a Nikon EclipseTi inverted microscope equipped 100× NA1.45 objective and an Andor Zyla 5.5 sCMOS camera. Image processing was performed using ImageJ.
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6

Quantitative Analysis of ANA by IIF

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Antinuclear antibodies (ANA) were detected by an indirect immunofluorescence assay using HEp-2 cells. Fixed HEp-2-coated microscope slides (Kallestad, BioRad) were blocked, incubated with serum diluted 1:100 and stained with anti-IgG-FITC (Southern Biotech) (10 μg/ml). Slides were mounted with SlowFade Gold Antifade Mountant with DAPI (ThermoFisher) and imaged. Anti-nuclear staining was quantitated as the mean flourescence intensity (MFI) of IgG-FITC over DAPI-staining areas (nuclei) using NIS-Elements AR software (Nikon). Data are presented as log nuclear IgG MFI normalized by subtracting the MFI of negative control serum from B6 mice. ANA images were collected using a Nikon Eclipse Ti inverted microscope and recorded with a Clara interline CCD camera (Andor). The images were taken with a 20X (immunofluorescence) objective for 200-400X final magnification. Images were collected using NIS Elements software, scale bars were added and images were saved as high-resolution JPEGs. JPEG images were imported into Canvas Ver 12 software and were resized, cropped with the identical settings applied to all immunofluorescence images from the same experiment. Final images presented at 600–650 dpi (ANA).
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7

Live Imaging of EPEC Infection

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Cells were grown on collagen coated coverslips and kept in DMEM low without phenol red (Gibco) supplemented with 10% FBS, 25 mM HEPES (Invitrogen), and 1xPSK. For treatment with cytochalasin, 1:1000 cytochalasin from a 1 mg/mL DMSO stock solution was diluted in imaging medium and added directly into the heating chamber.
For live infection experiments, MDCK cells were washed three times in 1 mL DMEM low, mounted in the heating chamber, to which infection medium (DMEM low without phenol red supplemented with 10% FBS and 25 mM HEPES buffer) was added. Cells were infected with 5.106 EPEC from an overnight culture or from a sub-culture of EPEC bacteria grown two hours 1:10 in infection medium to prime them for expression of virulent genes.
Live microscopy was performed on a Nikon Ti ECLIPSE inverted microscope equipped with a Perfect Focus 3 system, a CF160 Apo TIRF 100x objective, an Andor Zyla cMOS camera, and an Oko-Lab heating system kept at 37°C. Imaging was carried out with NIS-Elements software, and image analysis was performed with ImageJ (freely available from NIH [52 (link)]).
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8

High-Resolution TIRF Microscopy Imaging

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Total internal reflection fluorescence microscopy (TIR‐FM) was performed as previously described.63 Briefly, cells were mounted in PBS and imaged using a 60×, 1.49 NA APO TIRF objective (Nikon) mounted on a fully motorized Nikon Ti‐Eclipse inverted microscope with Perfect Focus System and coupled to an Andor “Diskovery TIRF/Borealis widefield illuminator” equipped with an additional 1.8× tube lens (yielding a final magnification of ×108). TIR‐FM illumination was achieved using a Diskovery Platform (Andor Technology). For live cell experiments, cells were maintained at 37°C during imaging. Imaging sequences were acquired using a sCMOS camera with 6.5 μm pixel size (pco.edge).
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9

Selective Imaging of Peripheral Endosomes

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To selectively image endosomal compartments close to the cell periphery, we adjusted the illumination of TIRF evanescent field to a theoretical penetration depth of ∼200 nm (thick TIRF). Briefly, fixed cells were mounted in PBS and imaged using a 60×, 1.49 NA APO TIRF objective (Nikon) mounted on a fully motorized Nikon Ti-Eclipse inverted microscope with Perfect Focus System and coupled to an Andor Diskovery TIRF/Borealis widefield illuminator equipped with an additional 1.8× tube lens (yielding a final magnification of 108×). TIRF illumination was achieved using a Diskovery Platform (Andor Technology). During imaging, cells were maintained at 37°C. Image sequences were acquired using a scientific CMOS camera with 6.5-µm pixel size (pco.edge).
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10

Live Cell Imaging with TIR-FM

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Total internal reflection fluorescence microscopy (TIR-FM) was performed as previously described.63 (link) Briefly, cells were mounted in PBS and imaged using a 60×, 1.49 NA APO TIRF objective (Nikon) mounted on a fully motorized Nikon Ti-Eclipse inverted microscope with Perfect Focus System and coupled to an Andor “Diskovery TIRF/ Borealis widefield illuminator” equipped with an additional 1.8× tube lens (yielding a final magnification of ×108). TIR-FM illumination was achieved using a Diskovery Platform (Andor Technology). For live cell experiments, cells were maintained at 37°C during imaging. Imaging sequences were acquired using a sCMOS camera with 6.5 μm pixel size (pco.edge).
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