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8 protocols using alexa fluor 594 conjugated donkey anti rabbit secondary antibody

1

Immunostaining of Murine Papillomavirus

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Skin necropsies were snap frozen in Tissue-Tek OCT Compound freezing medium (Sakura Finetek USA Inc.) and HE- and IFS performed on ethanol-fixed tissue sections of 6 µm thickness [9] (link), [13] (link). For detection of MusPV1 L1 protein, sections were stained with a rabbit polyclonal immune serum directed against MusPV1 L1 at a dilution of 1∶4000 and detected with either an Alexa Fluor 488 or an Alexa Fluor 594-conjugated donkey anti-rabbit secondary antibody (both Life Technologies), as indicated. Co-stainings with either directly conjugated Alexa Fluor 488-anti-mouse CD4 or Alexa Fluor 488-anti-mouse CD8a antibodies (both Biolegend; dilution 1∶100) were performed to detect CD4+ or CD8+ T cells, respectively. To determine localization of MusPV1 L1 in relation to basal keratinocytes, sections were co-stained with a phycoerythrin-conjugated anti-CD49f antibody (integrin alpha 6, BD Biosciences). Nuclei were visualized by mounting sections with ProLong Gold antifade reagent containing 4′,6-diamidino-2-phenylindole (DAPI) (LifeTechnologies). All microscopy analyses were performed on a Zeiss LSM 510 UV system and color levels of images were processed equally in Adobe Photoshop across experiments.
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2

Immunofluorescence Staining of BV2 Cells

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After been xed with 4% PFA for 30 min at room temperature (RT), BV2 cells were washed with PBS three times and subsequently blocked with PBS containing 0.1% Triton X-100 and 3% BSA for 1 h at RT. Then the cells were incubated with primary antibody of iNOS (18985-1-AP, Proteintech), CD86 (13395-1-AP, Proteintech), CD206 (18704-1-AP, Proteintech) and Arg1 (16001-1-AP, Proteintech) overnight at 4°C. The cells were then washed three times with PBS and incubated with Alexa Fluor 488-conjugated donkey antirabbit secondary antibody (A-21206, Life technologies) or Alexa Fluor 594-conjugated donkey anti-rabbit secondary antibody (A-21207, Life technologies) for additional 24 h at 4℃. The uorescence images were taken with Leica DMI 8 microscope.
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3

LRRK2 Expression in Spinal Cord

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In addition, LRRK2 immunofluorescence was performed in the SC of rats. The staining method was carried out as mentioned above. Primary antibody (ab133476, 1:50 dilution; Abcam) and Alexa Fluor 594-conjugated donkey anti-rabbit secondary antibody (1:200 dilution; Thermo Fisher Scientific) were used to evaluate local LRRK2 expression in SC in different groups.
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4

Quantification of Cumulus Cell Proliferation

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Cumulus cell proliferation was assessed by BrdU incorporation. Mice were injected with 100 mg BrdU/kg body weight 2 h prior to ovary collection. COCs were collected and fixed for 1 h in 4% paraformaldehyde. After 3 washes with PBS containing 0.1% Tween-20, COCs were permeabilized with 0.5% Triton X-100 for 20 min and blocked with 3% BSA in PBS for 30 min, then the COCs were incubated overnight with Rabbit anti-BrdU (100-fold dilution; Sigma) primary antibody. After thorough washing, the COCs were incubated for 1 h with Alexa Fluor 594-conjugated donkey anti-Rabbit secondary antibody (200-fold dilution; Thermo Fisher Scientific). The percentage of BrdU positive cumulus cells in relation to DAPI positive cells was determined by a confocal scanning laser microscopy (Nikon A1R-si) and the NIS Elements Basic Research software.
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5

Immunofluorescence analysis of smooth muscle markers

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Cells were fixed with paraformaldehyde and incubated with the following primary antibodies: rabbit polyclonal anti-a-SMA, rabbit polyclonal anti-SM22a, and rabbit polyclonal anti-SM-MHC antibodies for 60 min at room temperature, and then they were washed with PBS for three times. Alexa Fluor 594-conjugated donkey anti-rabbit secondary antibody (R37119; Thermo Fisher, US) was used to detect the localization of anti-a-SMA, anti-SM22a, and anti-SM-MHC antibodies, respectively. Nuclear staining was done with 4′,6-diamidino-2-phenylindole (DAPI). The images were viewed by a confocal laser scanning microscope (TCS, SP8; Leica, Germany).
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6

NF-κB Activation in hNPCs via TNF-α Stimulation

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hNPCs were stimulated with 20 ng/ml TNF-α. After 3 h, cells were fixed with 4% paraformaldehyde for 30 min at room temperature. Blocking and permeabilization were carried out in 10% normal donkey serum (NDS; Jackson ImmunoResearch), 3% bovine serum albumin, and 0.3% Triton X-100 (Sigma) prepared in PBS. Samples were incubated at 4 °C overnight with a primary antibody against NF-κB p65 (1:50; Santa Cruz Biotechnology) diluted in PBS containing 3% NDS. After being washed with PBS, slides were labeled with an Alexa Fluor 594-conjugated donkey anti-rabbit secondary antibody (1:500; Invitrogen, Carlsbad, CA, USA) in PBS containing 3% NDS for 1 h at room temperature. Cells were counterstained using Vectashield mounting medium containing 4′,6-diamidino-2-phenylindole (Vector, Burlingame, CA, USA) and visualized by fluorescence microscopy (BX51; Olympus, Center Valley, PA, USA).
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7

Immunofluorescent Staining of p21 Protein

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Cells were permeabilised by the addition of 100 µl of 0.1% (v/v) Triton X-100 in PBS per well for 20 min. Thereafter, the cells were blocked by incubation for 1 h with 50 µl blocking buffer (5% (w/v) BSA in PBS) followed by incubation overnight at 4 °C with 50 µl of anti-p21 antibody (Abcam, cat. no. Ab109520) diluted 1:1000 in blocking buffer. The cells were then washed three times for 5 min and incubated with 50 µl of an Alexa Fluor 594-conjugated donkey anti-rabbit secondary antibody (Invitrogen, cat. no. A21207) diluted 1:500 in blocking buffer for 1 h at room temperature in the dark, after which the cells were washed for 5 min with PBS and stained for 15 min with 50 µl Hoechst (Invitrogen, cat. no. H3570) and HCS CellMask™ Deep Red (Life technologies, cat. no. H32721) diluted 1:10,000 and 1:5000 in PBS, respectively. Finally, the cells were washed twice with PBS and imaged using a Yokogawa CV7000 confocal microscope and the images were analysed using the Columbus Image Analysis software (PerkinElmer).
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8

Tracking MSC Homing in Liver Injury

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Mice were transfused with GFP-transgenic mouse MSCs 30 min after ConA injection. After another 7.5 h, livers were harvested. Frozen sections were stained with anti-GFP antibody (Abcam, New Territories, Hong Kong) and labeled with Alexa Fluor 594 conjugated donkey anti-rabbit secondary antibody (Invitrogen) and DAPI (Sigma-Aldrich) to reveal localization of MSCs.
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