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14 protocols using pcdna3.1 nc

1

Regulation of OIP5-AS1 and miR-143-3p

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The si-OIP5-AS1, si-NC, pcDNA3.1-OIP5-AS1, pcDNA3.1-NC, miR-143-3p antagomir, NC antagomir, miR-143-3p agomir and NC agomir were designed and synthesized by Invitrogen (Shanghai, China). Twenty-four h before transfection, cells were aspirated into a six-well plate (1 × 105 cells/well) with fresh serum-free medium. Following transfection based on the instruction of the Lipofectamine 3000 kit (L3000015, Invitrogen, New York, USA), cells were correspondingly assigned into the si-OIP5-AS1 group (2.5 μg), si-NC group (2.5 μg, negative control of si-OIP5-AS1), pcDNA3.1-OIP5-AS1group (2.5 μg), pcDNA3.1-NC group (2.5 μg, negative control of pcDNA3.1-OIP5-AS1), miR-143-3p agomir group (200 nmol), NC agomir (200 nmol, negative control of miR-143-3p agomir), miR-143-3p antagomir group (200 nmol), NC antagomir (200 nmol, negative control of miR-143-3p antagomir), si-OIP5-AS1+miR-143-3p antagomir group, si-NC+NC antagomir group, si-OIP5-AS1+NC antagomir group, si-NC+NC antagomir group, si-NC+miR-143-3p antagomir group and si-NC+NC antagomir group. Blank group was set as the negative control (exposure to the Lipofectamine 3000 kit without any plasmid). Measurement or detection in each group was performed 48 h after cell transfection.
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2

Macrophage Transfection Protocol

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Monocyte-derived macrophages were seeded into a six-well plate and transfected with microRNAs (miRNAs) (50 nM), small-interfering RNA (siRNA) (50 pmol), or plasmid (5 μg) using Lipofectamine 3000 (Invitrogen, Carlsbad, CA, USA) at 37°C according to the manufacturer's instruction. After 24 h, the cells underwent further experimentation. MiR-146a mimics, miR-146a inhibitor, and negative control miRNA were obtained from GenePharma (Shanghai, China). The negative control (NC) siRNA, REG3A siRNA, IL-17RA siRNA, pcDNA3.1-NC, and pcDNA3.1-hREG3A were synthesized by Invitrogen (Carlsbad, CA, USA).
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3

Knockdown and Overexpression of YAP1 in Hepatocellular Carcinoma Cells

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Three small-interfering RNAs (siRNA) against YAP1 (siRNA-YAP1) and non-targeting siRNA (siRNA-NC) were designed and synthesized by GenePharma (Shanghai, China). A pcDNA3.1-YAP1 plasmid and the control plasmid (pcDNA3.1-NC) were also synthesized by GenePharma. Using Lipofectamine 2000 (Invitrogen, CA, USA) according to the instructions provided by the manufacturer, Hep-3B cells were transfected with siRNA-YAP1 recombinants or siRNA-NC, as well as with the pcDNA3.1-YAP1 plasmid or pcDNA3.1-NC plasmid. The SMMC-7721 cells were transfected with the pcDNA3.1-YAP1 plasmid or pcDNA3.1-NC plasmid. The non-transfected Hep-3B cells and SMMC-7721 cells served as controls check (CK). The expression of YAP1 protein in the cells was determined by Western blotting after 24 h, 48 h, and 72 h of incubation.
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4

Modulation of miR-223 and FLT3 in K562 and KCL22 Cells

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K562 and KCL22 cells were seeded into 6-well plates (2 × 105 cells/well). After 24 h-incubation, cells were transfected with inhibitor NC, miR-223 inhibitor, pcDNA3.1-NC, pcDNA3.1-FLT3, si-NC, or si-FLT3 (Genechem Co., Ltd., Shanghai, China) (siRNA 50 nM, miRNA-inhibitor 30 nM) using Lipofectamine 2000 (11668–019, Invitrogen, Carlsbad, CA, USA).
The cells were allocated into blank group, DMSO group, 2-ME group, AA group, 2-ME + AA group, 2-ME + AA + inhibitor NC group, 2-ME + AA + miR-223 inhibitor group, 2-ME + AA + pcDNA3.1-NC group, 2-ME + AA + pcDNA3.1-FLT3 group, 2-ME+AA+miR-223 inhibitor+si-NC group, and 2-ME+AA+miR-223 inhibitor+si-FLT3 group. The concentrations of 2-ME and AA were the corresponding IC50 values.
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5

Regulation of JAG1 by miR-26b in Cervical Cancer

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miR-26b mimic and inhibitor were employed to overexpress or knockdown miR-26b (both from Guangzhou RiboBio Co., Ltd., Guangzhou, China). pcDNA3.1-JAG1 and its negative control (pcDNA3.1-NC) were designed and synthesized from Sangon Biotech Co., Ltd. (Shanghai, China). Human cervical cancer cells HeLa and JAR were seeded in 6-well plates and when the cells were 80% transfection was performed. pcDNA3.1-JAG1 and pcDNA3.1-NC were transfected with Lipofectamine 3000, whereas miR-26b mimic or inhibitor used Lipofectamine 2000 (both from Invitrogen; Thermo Fisher Scientific, Inc.).
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6

Transfection of Breast and Stem Cells

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Breast cancer cells or HUCMSCs were transfected in accordance with the instructions of the Lipofectamine 2000 Transfection Reagent (11668-019; Invitrogen, Carlsbad, CA, USA) with miR-148b-3p mimic (4464066), miR-148b-3p inhibitor (4464084), TRIM59 overexpression plasmid (pcDNA3.1-TRIM59), siRNA targeting TRIM59 (siRNA-TRIM59; AM16708) or their negative controls including NC-mimic (4464060), NC-inhibitor (4464076), TRIM59-NC (pcDNA3.1-NC), and siRNA-NC (4390843). All the above-mentioned sequences and plasmids for transfection were purchased from Thermo Fisher Scientific (Waltham, MA, USA).
More specifically, the cells at the logarithmic phase of growth were trypsinized and triturated into a single cell suspension, seeded into a 6-well, and transfected once the cells had reached ~80% confluence. The cells were cultured at 37°C with 5% CO2 and saturated humidity after transfection. After 48 h, the medium was renewed with RPMI-1640 complete medium for further 24–48 h culture for follow-up experiments.
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7

Overexpression and Knockdown of circ_0017639

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The pcDNA3.1/circ_0017639 and sh-circ_0017639 were developed by GenePharma (Shanghai). H1755 and H2170 cells (2 × 105 cells) were then incorporated with 2 μg pcDNA3.1/circ_0017639 (circ_0017639) or pcDNA3.1/NC (vector), A549 and H1299 cells (2 × 105 cells) were incorporated with 100 nM sh-circ_0017639 (CGGTGACTAAGCAATCAAAGA) or sh-negative control (sh-NC), Lipofectamine 3000 (Invitrogen, Carlsbad, CA, USA) per operational guidelines. Following 48 h of incubation, the cells underwent additional examinations.
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8

Plasmid Transfection and Gene Silencing in BxPC-3 Cells

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The recombinant plasmids, pcDNA3.1-MAGT1, pcDNA3.1-TCF12 and the negative control (NC), pcDNA3.1-NC were purchased from Shanghai GeneChem Co., Ltd. MAGT1-specific short hairpin (sh)RNAs (sh-MAGT1-1 and sh-MAGT1-2), non-targeting shRNA, TCF12-specific small interfering (si)RNAs (si-TCF12-1 and si-TCF12-2) and non-targeting siRNA were synthesized, and purified by Guangzhou RiboBio Co., Ltd. Subsequently, 2 µg/ml plasmids, shRNAs and siRNAs were transfected or co-transfected (si-TCF12-2 + pcDNA3.1-MAGT1 or pcDNA3.1-NC) into the BxPC-3 cell line using Lipofectamine® 3000 Reagent (Invitrogen; Thermo Fisher Scientific, Inc.) at 37°C for 6 h according to manufacturer's recommendations. Untransfected cells served as an additional control. At 48 h after transfection, cells were selected for subsequent experiments. The sequences are as follows: sh-MAGT1-1 sense, 5′-GGTCAAATGTGGAACCATA-3′ and antisense 5′-TATGGTTCCACATTTGACC-3′; sh-MAGT1-2 sense, 5′-GGAGATGGTGTTATCTGAA-3′ and antisense, 5′-TTCAGATAACACCATCTCC-3′; sh-NC sense, 5′-GATCCCCCTTCTCCGAACG-3′ and antisense, 5′-AGCTAAAAATTCTCCGAAC-3′; si-TCF12-1 sense, 5′-CAGCAGAGAUACUGGAUUA-3′ and antisense, 5′-UAAUCCAGUAUCUCUGCUG-3′; si-TCF12-2 sense, 5′-GGAACAAGUGGUCAACCAA-3′ and antisense, 5′-UUGGUUGACCACUUGUUCC-3′; and si-NC sense, 5′-GGCUCUAGAAAAGCCUAUGC-3′ and antisense, 5′-CCGAGAUCUUUUCGGAUACG-3′.
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9

miR-135b-5p Regulates Breast Cancer Cell Cycle

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HER-2-positive breast cancer cells BT-474 and SK-BR-3 and the normal breast epithelial cell line MCF-10A were obtained from the American Type Culture Collection. Both cell lines were grown in Roswell Park Memorial Institute medium (Thermo Fisher Scientific, Inc.), which was supplemented with 10% fetal bovine serum (Thermo Fisher Scientific, Inc.) and 1% penicillin/streptomycin. The cells were maintained at 37°C in a humidified atmosphere at 5% CO2.
miR-135b-5p agomir (5′-UAU GGC UUU UUA UUC CUG UGU GA-3′) and its negative control (NC; 5′-UUU GUA CUA CAC AAA AGU ACU G-3′) were synthesized and purchased from Guangzhou RiboBio Co., Ltd. The cells were transfected with 50 nM miR-135b-5p agomir and its NC (50 nM) using Lipofectamine 3000 (Invitrogen; Thermo Fisher Scientific, Inc.) for 24 h according to the manufacturer's protocol. Cells in the blank group were not given any treatment.
pcDNA3.1-cyclin D2 was purchased from Shanghai GenePharma Co., Ltd. BT-474 cells were transiently transfected with 2 µg/ml pcDNA3.1-NC or 2 µg/ml pcDNA3.1-cyclin D2 using Lipofectamine™ 3000 (Invitrogen; Thermo Fisher Scientific, Inc.) for 48 h according to the manufacturer's instructions.
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10

Transient TRAIL Overexpression in Lung Cells

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pcDNA3.1-TRAIL and pcDNA3.1-NC were obtained from RiboBio (Beijing, China). According to the instructions of manufacturer, A549 and H1299 cells were incubated with pcDNA3.1-TRAIL and pcDNA3.1-NC for 48 h using Lipofectamine 3000 reagent (Invitrogen, Carlsbad, CA, USA). Subsequently, the transfected cells were collected for the next experiments.
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