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12 protocols using neomycin sulfate

1

Antibiotic Effects on Offspring Development

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FH-A2D mice (Gregg et al., 2010 (link)) were maintained under protocols approved by Loyola’s Institutional Animal Care and Use Committee following the Guide. Mice were administered antibiotics upon pregnancy and litters were maintained on ampicillin or neomycin, or left untreated (n = 10 for control (6♂, 4♀) and ampicillin (5♂, 5♀), n = 8 for neomycin (5♂, 3♀) groups). Antibiotics were administered as 1 g/L of ampicillin sodium salt (Sigma-Aldrich, St. Louis, MO) or 1 g/L of neomycin sulfate (Fisher BioReagents, Pittsburgh, PA), combined with 2.5 g/L of Equal® Sweetener in drinking water (Wu et al., 2010 (link)). Pups continued antibiotic treatment via lactation and post-weaning. Water was exchanged weekly, keeping stocks at −20°C for up to one month.
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2

Microbiota Transfer and DSS Colitis

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Donor microbiota was obtained by scraping mucus and feces from colons of WT and miR-146a−/− mice. Scrapings were placed in sterile PBS, centrifuged at 400G to remove debris, then resuspended and centrifuged at 8000G to obtain bacteria. Samples were resuspended in sterile PBS and flash frozen for gavage. Recipient mice were treated with an antibiotic cocktail of Gentamycin (Goldbio), Ampicillin (Cellgro), Neomycin Sulfate (Fisher), and Erythromycin (Fisher); each at 0.5g/L in drinking water for 7 days. After 7 days, drinking water was changed to regular water and 100ul of donor WT or miR-146a−/− bacteria was orally gavaged into recipient mice every day for 7 days. Following gavage, mice rested for 7 days to allow for microbiota stabilization. Finally, DSS colitis was administered in recipient mice using the methods described above.
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3

Synthesis of Acyl-modified Glycerol Ethers

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Paromomycin sulfate, neomycin sulfate, and 3.5kDa molecular weight cut-off (MWCO) dialysis membranes were purchased from Fisher Scientific. Apramycin sulfate, resorcinol diglycidyl ether (RDE), glycerol diglycidyl ether (GDE), butyryl (C4), hexanoyl (C6), octanoyl (C8), myristoyl (C14) or stearoyl chlorides (C18), triethylamine, N,N-dimethylformamide (DMF), dimethyl sulfoxide (DMSO) were purchased from Sigma-Aldrich. All other chemicals were purchased from Sigma-Aldrich and used without further purification.
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4

Analytical-Grade Reagents Protocol

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All reagents used in this study were of analytical grade and commercially available. Agar, brewer's yeast, L-ascorbic acid, and neomycin sulfate were purchased from Fisher Scientific (Thermo-Fisher Scientific, Waltham, Massachusetts, USA); acetone, ethanol, formaldehyde, methyl p-hydroxybenzoate, 1-octacosanol were from Sigma-Aldrich (St. Louis, Missouri, USA).
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5

Caco-2 Intestinal Epithelial Monolayer Protocol

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The human colonic epithelial cell line Caco2-C2BBe1 was obtained from the American Type Culture Collection (Manassas, VA, USA) and cultured in Dulbecco’s modified Eagle’s medium supplemented with 10% heat-inactivated fetal bovine serum, 50 μg/mL penicillin, 50 μg/mL streptomycin sulfate, and 100 μg/mL neomycin sulfate (Invitrogen, Carlsbad, CA, USA). An intestinal epithelial monolayer was formed as per the method of Chen et al. [19 (link)]. Briefly, the cells were cultured under a humidified atmosphere of 5% CO2 at 37 °C. The Caco-2 cells were seeded onto permeable 12-well Transwell membranes (Corning, Lowell, MA) with a 3-μm pore size (density, 105/cm2) to form the intestinal epithelial monolayer. The culture medium was replaced with fresh medium every 2 days during the 28-day culture period. After 28 days, the transepithelial electrical resistance (TEER) of Caco-2 epithelial monolayers was >300 Ω·cm2, indicating that the monolayers were ready to use [20 (link)]. The TEER was measured using an epithelial volt-ohmmeter with an STX2 probe (World Precision Instruments, Sarasota, FL, USA).
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6

Antibiotic Treatment Modulates TMEV Infection

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Mice were provided autoclaved drinking water supplemented with ampicillin (1 g/L, Sigma-Aldrich, Madrid, Spain), metronidazole (1 g/L, Sigma-Aldrich, Madrid, Spain), neomycin sulfate (1 g/L, Gibco-Invitrogen, Barcelona, Spain) and vancomycin (0.5 g/L, Sigma-Aldrich Madrid, Spain). ABX treatment started 14 days before TMEV infection and terminated on day 14 post-infection (pi). Animals were sacrificed on day 14 or 85 pi to assess the influence of early ABX treatment on the outcome and severity of the disease.
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7

Murine Transgenic αPIG-iPS Cell Line

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A murine transgenic αPIG-iPS cell line, in which the puromycin-N-acetyl transferase and the enhanced green fluorescent protein (eGFP) genes are under the control of the cardiac-specific alpha-myosin heavy chain (α-MHC) promoter [41 (link)], was used in this study to facilitate bioprocess development. The fluorescence marker and the antibiotic resistance genes, specifically expressed in CMs, allow easy monitoring of the cardiac differentiation process and selection of a highly pure CM population upon addition of puromycin into the media, respectively. iPSCs were cultivated on a monolayer of mitotically inactivated murine embryonic fibroblasts (MEFs) in Dulbecco’s modified Eagle medium (DMEM) supplemented with 15 % (v/v) fetal bovine serum (FBS), 1 % (v/v) non-essential amino acids (NEAA), 2 mM L-glutamine, 50 μM β-mercaptoethanol, 500 μg/mL neomycin sulfate (all from Invitrogen, UK), and 1000 U/mL leukemia inhibitory factor (LIF) (ESGRO, Merck Millipore, Germany), at 37 ºC in a humidified atmosphere of 5 % CO2. Cells were passaged every two days as previously reported [41 (link)].
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8

Adoptive Transfer of C-myc OT1 T cells

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Act-mOVA mice (CD90.2) were lethally irradiated with 12 Gy and reconstituted with T cell-depleted bone marrow from either C-mycfl/fl OT1 or C-mycfl/flCd4Cre-Tg OT1 (CD90.1) mice. All irradiated mice received antibiotics in the drinking water (1 g/l neomycin sulfate, Thermo Fisher Scientific) during the first 3 weeks after irradiation.
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9

Combination Antibiotic Treatment Protocol

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For antibiotic treatment, a mixture of 1 g/liter of ampicillin sodium salt (Sigma-Aldrich), 1 g/liter of metronidazole (Sigma-Aldrich), 0.5 g/liter vancomycin hydrochloride (Research Products International), and 1 g/liter neomycin sulfate (Thermo Fisher Scientific) plus 2.5 g/liter of the sweetener Equal were used.
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10

Antibiotic Cocktail Modulates Gut Microbiome

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Immediately after weaning, 3- to 4- week-old littermates were administrated weekly with 1 g/L of Ampicillin sodium salt (Sigma Aldrich), 1 g/L of Metronidazole (Acros Organics), 0.5 g/L Vancomycin hydrochloride (Research products international), and 1 g/l of Neomycin sulfate (Thermo Fischer Scientific) in the drinking water as previously described (Wu et al., 2010 (link)). Sweetener (Equal) was added to the water (2.5 g/L) of the experimental group and the control group. For analysis at homeostasis, mice were treated with antibiotics for 6 weeks. For analysis during EAE, mice were treated with antibiotics starting 2-weeks prior to immunization and through the disease course.
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