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Lcms grade

Manufactured by Honeywell
Sourced in United States

The LCMS grade equipment is designed for liquid chromatography-mass spectrometry (LC-MS) applications. It provides reliable and accurate performance for analytical and research purposes. The core function of this equipment is to facilitate the separation, identification, and quantification of complex chemical compounds using liquid chromatography coupled with mass spectrometry.

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8 protocols using lcms grade

1

Plasma Metabolite Extraction Protocol

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Blood collected in vacutainer tubes (EDTA) was centrifuged at 4°C and 3000 g for 15 min. Plasma was aliquoted and stored at −80°C until use. Plasma thawed in ice was extracted with pre-cooled isopropanol in a 1:3 ratio (LCMS grade, Honeywell, Charlotte, NC, United States) (Medina et al., 2020 (link)) vortexed for 1 min and incubated at −20°C overnight for protein precipitation. Subsequently, the extraction mix was centrifuged at 16000 g and 4°C for 15 min and supernatants were carefully collected. An additional step of centrifugation was done to remove any debris collected. For the analysis, each aliquot was transferred into certified LC vials (TruView LCMS, United States) and diluted to 1:20 ratio with a mixture of isopropanol/acetonitrile/water (2:1:1, v: v: v). Sample preparation order was randomized for sample picking to ensure no systematic biases were present during sample preparation.
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2

HILIC-MS Analysis of Brain Metabolites

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Chromatographic analysis was performed using a 1.7-μm BEH Amide column, 2.1 × 50 mm (Waters® Corp., Milford, MA) under HILIC conditions. For mobile phase A, 0.1% formic acid in water (LC-MS grade; Honeywell Intl. Inc., Morris Plains, NJ) was used, and for phase B, acetonitrile (LC-MS grade; Honeywell) was used. The injection volume for all standards was 5.0 μl and that of brain extract was 10 μl. The flow rate was 0.4 ml/min. A step gradient elution was performed as follows: starting with 90% B to 3.51 min and at 3.51 min change to 40% B to 5.50 min. Re-equilibration to the original condition was done for 15 min.
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3

Plasma Metabolite Extraction Protocol

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Thawed plasma measuring 100 μ L in ice was extracted with 300 μ L of precooled isopropanol (LCMS grade, Honeywell, Charlotte, NC, USA), vortexed for 1 min and incubated at −20 °C for 1 h for protein precipitation. Subsequently, the extraction mixture was centrifuged at 15,800× g for 15 min, and supernatants were collected. For the analysis, each aliquot was transferred into LC vials and diluted to 1:20 with a mixture of isopropanol/acetonitrile/water (2:1:1, v:v:v). Sample preparation and analysis orders were randomized to ensure no systematic bias was present.
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4

Dopamine Production Assay in E. lenta

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Plasmid pXD70Tet(DadH) encoding the active Dadh variant Dadh(A2) under native promoter Pdadh, and plasmid pXD70Tet(DadHR) encoding Dadh(A2) under native promoter Pdadh and DadR were transformed into the ΔdadR mutant and DSM 2243 WT by electroporation. The E. lenta strains were inoculated and grown to saturation in BHIrf media with 20 μg/mL tetracycline. The saturated cultures were then inoculated 1:20 into 200 μL of BHIrf with 20 μg/mL tetracycline in quadruplicate in 96-well plates. 1 mM dopamine was then added to each culture. Plates were incubated at 37 °C anaerobically for 72 h. Next, the endpoint OD600 of each culture was measured using a Synergy HTX Multi-Mode Microplate Reader (BioTek). The plates were then centrifuged (3220 × g, 10 min, 4 °C), and the supernatants were harvested. For each sample, 20 µL of the supernatant was diluted 1:10 with 180 µL of LC-MS grade (Honeywell) methanol, and 40 µL of the resulting mixture was then diluted 1:5 with 160 µL of Milli-Q water. The amount of dopamine and m-tyramine production in the diluted mixtures were quantified measured using UPLC-MS/MS as described above.
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5

Diverse Candida auris Strains Collection

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Candida auris strains used in this study were acquired from the National Culture Collection of Pathogenic Fungi (NCCPF), Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh (NCCPF 470156, NCCPF 470157 both isolated from blood, and NCCPF 470296, isolated from pus). CBS 10913T, the first clinical isolate of C. auris, was acquired from the Central Bureau voor Schimmel Cultures (CBS), Fungal Biodiversity Centre of the Royal Netherlands, Academy of Arts and Sciences (KNAW), the CDC & FDA Antibiotic Resistance Isolate Bank (AR 0383–0386, all isolated from blood and AR 1097 isolated from ear discharge). Strains VPCI 479/P/13 (isolated from blood), and LMDM 1219 (Li et al. 2021 (link)) were received as a kind gift from Prof. Dominique Sanglard, University of Lausanne and University Hospital Centre, Lausanne, Switzerland. All strains were archived in 25% glycerol at −80°C and revived on YPD agar at 30°C for experimental purposes.
All solvents and reagents used (unless specified) were LCMS grade, purchased from Honeywell NC, USA, and Sigma Aldrich MO, USA. Lipid standards were purchased from Avanti Polar Lipids Inc. AL, USA.
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6

Metabolomic Analysis of DCAF15 Knockout

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KELLY Parental (PAR), DCAF15WT and DCAF15KO cells were seeded in 6 well plates and allowed to attach and reach 80% confluency. Cells were then treated with fresh media with 10 µM indisulam or 0.1% DMSO (vehicle control). After 24 h incubation, media was carefully removed, and wells were washed with phosphate saline buffer. Wells were quenched with 1.5 mL of pre-chilled 100% MeOH (LC–MS grade, Honeywell), 10 µL of an internal standard mixture (5–50 µg mL−1 of stable isotope-labelled modifications of 21 analytes, representative of all metabolite classes) was added to each well. All wells were scrapped, and cellular content was dried down completely under N2 flow. Then, samples were dual-phase extracted as previously described and the polar phase was dried down completely under N2 flow and stored at −80 °C. Upon measurement, samples were thawed on ice and resuspended with 100 µL H2O and measured by LC–MS/MS in positive and negative modes.
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7

Metabolite Extraction and Benchmarking

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LC/MS-grade, Burdick & Jackson brand water, acetonitrile, and methanol were purchased from Honeywell (Muskegon, MI). LC/MS-grade eluent ammonium acetate, ammonium formate, and ammonium carbonate were purchased from Sigma-Aldrich (St. Louis, MO). TraceSELECT Fluka brand ammonium phosphate monobasic was purchased from Honeywell (Muskegon, MI). Dried metabolic extracts of credentialed E. coli were purchased from Cambridge Isotope Laboratories (MSK-CRED-DD-KIT). A list of the full names and suppliers of the 65 chemical standards we used to benchmark experiments is included in Table S1.
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8

Extraction and Identification of A. mongolica

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The seeds of A. mongolica were collected from Alashan Yabulai Gobi (104°48′09″ E 40°11′24″N) and identified as A. mongolica by Professor Shi Song-li of School of Pharmacy, Baotou Medical College. Following reagents were purchased: benazepril hydrochloride (Beijing Novartis Pharmaceutical Co., Ltd., China); pentobarbital sodium (Merck, Germany); sodium carboxymethyl cellulose (Analytical Pure, Tianjin Kaitong Chemical Reagent Co., Ltd., China); penicillin sodium for injection (North China Pharmaceutical Co., Ltd., China, batch number: F7116323); HE and Masson dyeing kits (Nanjing Jiancheng Technology Co., Ltd., China); methanol (LC-MS grade, Honeywell, USA, 67-56-1); acetonitrile (LC-MS grade, Honeywell, 75-05-8); and formic acid (LC-MS grade, Sigma-Aldrich, USA, 64-18-6).
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