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Chelating sepharose fast flow

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Chelating Sepharose Fast Flow is a chromatography resin designed for the purification of proteins and other biomolecules. It is composed of highly cross-linked agarose beads that have been functionalized with chelating groups, allowing for the capture and separation of target molecules based on their affinity for metal ions. The resin is suitable for use in a variety of liquid chromatography applications, including fast protein liquid chromatography (FPLC) and low-pressure column chromatography.

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6 protocols using chelating sepharose fast flow

1

Purification and Expression of scFv-Fc Antibody Fragments

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ScFv fragments were purified via His-tag affinity chromatography. The scFv encoding bacterial XL1-Blue MRF culture was induced with 50 µM IPTG for 3 h at 250 rpm at 30°C. The bacterial pellet was resuspended in ice-cold PE-Buffer (pH 8, 20% (w/v) sucrose, 50 mM Tris, 1 mM EDTA) and centrifuged at 20,000×g for 30 min. The supernatant was dialyzed against PBS (Servapor dialysing tube, 12–14). Chelating Sepharose Fast Flow (Amersham) was incubated with nickel sulfate solution (0.1 M NiSO4) and washed with PBS. Afterwards, the sepharose was incubated with the dialyzed scFv supernatant at 4°C for 30 min. After several washing steps, scFv were eluted with 0.1 M EDTA and dialyzed against PBS at 4°C o.n.
ScFv were cloned into the pCMV-hIgG1-Fc-XP vector [53] (link) to express scFv-Fc antibodies and were analyzed by PCR with primers pCMVfor (5′-CGC AAA TGG GCG GTA GGC GTG-3) and pCMVrev (5′-CCA GGA GTT CAG GTG CTG-3′). ScFv-Fc were expressed in 293T cells after transient transfection with 10 µg/plate scFv-Fc encoding vectors. 293T cell supernatants were incubated with protein A agarose (Pierce), eluted in several fractions with elution buffer (0.1 M citric acid, 0.1 M Tri-sodium citrate, pH 2.5) and neutralized with 2 M Tris, pH 9. Pooled fractions were centrifuged and concentrated with 30 kDa cut-off amicons (Millipore).
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2

Protein Expression and Purification Protocol

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All chemicals were from Sigma-Aldrich (St. Louis, MO, USA), unless otherwise specified. The Escherichia coli Rosetta(DE3) strain was purchased from Novagen (Madison, WI, USA). Restriction endonucleases and other cloning reagents were purchased from Fermentas (Glen Burnie, MD, USA). Chelating Sepharose Fast Flow was from Amersham Biosciences (Arlington Heights, IL, USA), and the Isolate II PCR and Gel Kit (Bioline, London, UK). The dye reagent for protein assay was from Bio-Rad (Hemel Hempstead, Herts, UK).
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3

Antibody Reagents for Western Blotting

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All chemicals were of analytical or highest available grade and, unless otherwise stated, were obtained from Sigma-Aldrich. Polyvinylidene difluoride (PVDF) Hybond-P, Chelating Sepharose Fast Flow, and DEAE-Sephacel were from Amersham Ge-Healthcare. Reagents for protein assay were from Bio-Rad. Mouse anti-Hsp60 and Hsp-10 monoclonal antibodies were from Stressgen. Monoclonal mouse anti-LSD1 antibody was from Santa Cruz Biotechnology. Monoclonal mouse anti-β-actin antibody was from Abcam. Peroxidase conjugated anti-rabbit and anti-mouse IgG secondary antibodies were from Thermo Scientific. Alkaline phosphatase conjugated anti-rabbit and anti-mouse IgG secondary antibodies were from Sigma-Aldrich. Alexa Fluor conjugated anti-rabbit or anti-mouse IgG secondary antibodies were from Molecular Probes.
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4

Purification of Igα and Igβ peptides

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Chelating Sepharose Fast Flow (Amersham Biosciences) was charged with Ni ions and washed extensively in 25 mM sodium phosphate buffer (pH 7.4) containing 50 mM DPC. To one half of the resin was added a solution of 100 uM His6-Igβ peptide solubilized in the same buffer conditions. The peptide and resin were mixed on a rotary mixer for 2 h at room temperature before pouring into a gravity flow column. An equivalent column, containing no added His6-Igβ peptide, was also prepared. Both columns had a bed volume of 500 μl. A 1-ml solution containing 100 uM Igα peptide solubilized in 25 mM sodium phosphate buffer (pH 7.4, 50 mM DPC) was prepared, and 500 μl of this solution was added to each column. Fractions of 500 μl were collected and analyzed by fluorescence spectroscopy and SDS-PAGE.
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5

Purification of Recombinant D1.3 scFv

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Recombinant D1.3 scFv was purified via IMAC. For this purpose a gravity flow column (BIORAD, Hercules, California, USA) was loaded with 1 mL Chelating Sepharose Fast Flow (Amersham Biosciences, Freiburg, Germany), washed with 10 mL H2O, incubated with 2 mL 100 mM NiSO4 for 10 min and washed with 5 mL H2O followed by 5 mL washing buffer (50 mM NaCl, 20 mM Tris–HCl pH 8.6). The nickel charged Sepharose was transferred to 50–100 mL of culture supernatant containing 7 mM of imidazole and mixed for 90 min at 4 °C. The Sepharose was pelleted by centrifugation (1500×g, 5 min, 4 °C) and washed with 3 mL washing buffer. Elution was performed with 3 × 1 mL elution buffer (50 mM EDTA in washing buffer). 18 µL of each fractions were analyzed by SDS-PAGE analysis (12% of acrylamide) as described before [83 ]. Gels were stained with SimplyBlue™ SafeStain according to the manufacturer’s instructions for the microwave procedure (Thermo Fisher Scientific Inc., Waltham, Massachusetts, USA). Band visible on the stained SDS PAGE corresponding to recombinant D1.3 scFv in the elution fractions from IMAC were quantified by densitometric analysis (ImageJ 1.48v, National Institute of Health, Bethesda, USA) related to a BSA standard (10–100 mg L−1).
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6

Purification and Analysis of His-β-catenin Complexes

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Truncated His-β-catenin fusion proteins were expressed and purified according to manufacturer's instructions (Amersham). 5 µg of the His-β-catenin or His-β-catenin deletion fusion proteins were mixed with 40 µl of 50% suspension of Chelating Sepharose Fast Flow (Amersham Pharmacia Biotech AB, Uppsala, Sweden) charged with nickel ions for 1 h in the binding buffer. Then 5 µg of GST fusion proteins were added followed by incubation for another 1 h. The pellets were washed extensively and boiled. A negative control experiment was performed simultaneously with His-β-catenin fusion proteins and GST. The bound proteins were resolved by 12% SDS-PAGE gel and detected by western blot analysis with mouse monoclonal antibodies against GST (sc-138) (Santa Cruz Biotech).
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