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6 protocols using m154cf500

1

Keratinocyte Culture and Inhibitor Assays

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Normal human keratinocytes (NHKs) were established from healthy adults as previously described(60 (link)) and grown in medium 154 CF (Thermofisher M154CF500) with human keratinocyte growth supplement (Thermofisher S0015). Inhibitors used included the MEK1/2 inhibitor PD98059 (Tocris 1213), the MEK5 inhibitor Bix02189 (Tocris 4842) and the IκBα phosphorylation inhibitor Bay 11–7085 (Tocris 1743) according to the manufecturer’s specifications. siRNA was introduced by electroporation using Lonza 4D-nucleofector following manufacturer’s instructions. Cytokine stimulations were performed as previously reported(61 (link)). qRT-PCR was performed on a 7900HT Fast Real-time PCR system (Applied Biosystems) with TaqMan Universal PCR Master Mix (ThermoFisher 4304437).
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2

Culturing Immortalized Keratinocytes and Fibroblasts

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THEKs from original line N/TERT-2G (31 (link)) (a gift from James Rheinwald, Brigham and Women’s Hospital, Boston, Massachusetts, USA) were grown in keratinocyte serum-free medium (KSFM) ordered as a kit (Thermo Fisher Scientific catalog 37010022) with supplements of 0.2 ng/mL human epidermal growth factor and 30 μg/mL bovine pituitary extract. Other additives included 0.31 mM CaCl2, 100 U/mL penicillin, and 100 μg/mL streptomycin.
NHEKs were procured as described below and grown in Medium 154 with 0.07 mM CaCl2 (Thermo Fisher Scientific catalog M154CF500), 1× human keratinocyte growth supplement (Thermo Fisher Scientific catalog S0015), and 1× gentamicin/amphotericin (Thermo Fisher Scientific catalog R01510).
J2-3T3 immortalized murine fibroblasts (a gift from Kathleen Green, Northwestern University, Chicago, Illinois, USA) were grown in complete DMEM (Thermo Fisher Scientific catalog 11965092) supplemented with 10% FBS (Hyclone, Thermo Fisher Scientific catalog SH3039603), 2 mM GlutaMAX (Thermo Fisher Scientific catalog 35050061), 100 U/mL penicillin, and 100 μg/mL streptomycin.
All cell lines were maintained at 37°C in 5% CO2 in an air-jacketed, humidified incubator. Cells were grown on sterile cell culture dishes and passaged at subconfluence using 0.25% Trypsin-EDTA (Thermo Fisher Scientific catalog 15400054).
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3

BCC Cell Culture and Validation

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ASZ001 BCC cells were cultured in 154CF medium (ThermoFisher; M154CF500) supplemented with 2% chelated FBS and 0.05 mM CaCl2 as previously indicated13 (link). Experiments were carried out using low serum conditions with 154CF medium containing 0.2% chelated FBS and 0.05 mM CaCl2. ASZ_001 cells were derived from mouse basal cell carcinoma cells and previously authenticated52 (link). In our experiments, cells were monitored by their morphology, sequencing, and utilization of mouse-specific primers. No mycoplasma was detected through regular testing.
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4

Establishment of UCSF-OT-1109 Cell Line from Oral Tumor

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Under an approved Institutional Review Board (IRB) protocol (10-01635) and with informed consent, a portion of fresh tumor tissue was collected from a 44-year-old woman with invasive, keratinizing OTSCC who had never smoked. The tissue was divided into 3-mm cubes; these were placed into 10-cm dishes and maintained in a serum-free 154CF medium (M154CF500, Thermo Fisher Scientific, Waltham, MA) with 0.07 mM Ca2+ and growth supplements (both provided as separate components with the medium) in a 5% CO2 incubator at 37°C.
Fifty independent colonies were cloned. They were cultured continuously in serum-free medium Defined Keratinocyte-SFM (10744019, Thermo Fisher Scientific) in addition to growth supplements (10744019, Thermo Fisher Scientific; provided as a separate component with the medium), penicillin, and streptomycin. Each clone was passaged every seven days. After 20 passages, the cells were cultured in RPMI medium (11875-093, Thermo Fisher Scientific) containing 10% fetal bovine serum (FBS) until passage 50 (p50). The established cell line was named UCSF-OT-1109 after the recommended style for cell-line designation of the International Cell Line Authentication Committee (ICLAC) [14 ].
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5

Cell Line Cultivation and Reagent Acquisition

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All chemicals were purchased from Sigma Aldrich unless otherwise noted in Supplemental Figure 1. The ASZ and BSZ cell lines were obtained from Professor Robert Holmgren at Northwestern University. FBS, M154 media, DPBS, and NucBlue stain were obtained from ThermoFisher (MT35010CV, M154CF500, 14190250, and R37605, respectively). Trypsin was obtained from Gibco (TrypLE, 12563011) Pen/Strep was obtained from Sigma Aldrich (P0781). All DNA sequences were obtained from IDT with standard desalting and HPLC purification.
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6

Keratinocyte Cytokine Profiling for Psoriasis

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The procedures have been described previously (36 ). Briefly, we obtained 50 normal human keratinocytes from 50 different healthy adults. Keratinocytes were grown in 12 well plate in 154 CF medium (Thermo Fisher #M154CF500) with human keratinocyte growth supplement (Thermo Fisher #S0015). Keratinocytes were grown to confluency at which time the complete medium (with supplements) was replaced by basal 154 CF medium (without supplements). Cells were stimulated with cytokines (IL-4, IL-13, IFN-α, IFN-γ, TNF-α, IL-17A, R&D Systems) individually at 10 ng/ml concentration. After 8hrs cells were harvested and RNA was isolated using RNeasy Plus Mini kit (Qiagen # 74136). RNA was analyzed by RNA Nano Chips (Agilent Technologies) and sequenced (37 ). We extracted the top 1,000 genes with their baseline expression profiles showing the strongest correlations with future absolute PASI improvement in each of the three follow-up visits, and used hypergeometric test to compare against cytokine signatures to understand their molecular basis.
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