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16 protocols using lipofectamine 3000 transfection agent

1

Modulation of Sertoli Cell miR-100-3p

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The mimics, inhibitors, and the controls for miR-100-3p were bought from GenePharma (Shanghai, China). The oligonucleotide sequences for miR-100-3p mimics and inhibitors were shown in Supplementary Table 3. Human Sertoli cells were planted to the culture dish at 1 × 105 Sertoli cells/cm2 density, and they were cultured with DMEM/F12 containing the 10% FBS overnight. Human Sertoli cells were classified into four groups, namely, miR-100-3p mimics, miRNA mimics control, miR-100-3p inhibitor, and miRNA inhibitor control. Similarly, human Sertoli cells were categorized into four groups, including SGK3 siRNA 1, SGK3 siRNA 2, SGK3 siRNA 3, and the control siRNA. Transfection of miR-100-3p mimics, inhibitor, or SGK3 siRNA1-3 was completed, respectively, utilizing Lipofectamine 3000 transfection agent (Life Technologies, Carlsbad, CA, United States). Forty-eight or seventy-two hours after transfection, the cells were used for determining the mRNA or protein levels.
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2

Luciferase Assay for miRNA Targeting

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Human SSC line was seeded in a 48-well culture plate and cultured at 37° C in 5% CO2 for 24 hr. MiRNA mimics were first transfected to the cells using lipofectamine 3000 transfection agent (Life Technologies, Carlsbad, CA, USA). Ten hours later, 500 ng plasmids with the target sequences, Firefly Luciferase (reporter), and Renilla Luciferase (internal control) (pMIR-GIO, Genecreate, Wuhan, China) were transfected by lipofectamine 3000 reagent (Life Technologies, Carlsbad, CA, USA). Cells were lysed after 48 hr of transfection, and luciferase activity was measured using the tube luminometer (Berthold, Germany). Data were normalized to miRNA mimic control-transfected cells.
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3

SKBR3 and HeLa Cell Culture and EGF Stimulation

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SKBR3 and HeLa cells (gifts from the Dr. Aaron Rowland Lab) were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM) supplemented with 10% v/v Fetal Bovine Serum (FBS) and grown in an incubator at 37°C with 5% CO2. Transient transfections were performed using Lipofectamine LTX or Lipofectamine 3000 transfection agent according to the manufacturer’s protocol (Life Technologies).
EGF stimulation studies were performed as follows. Cells were serum starved overnight, incubated with 10ng/mL EGF at 37°C and 5% CO2 for 15 to 30 minutes, followed by cell fixation and permeabilization for immunofluorescence analyses.
To prepare mammalian cell lysates for Western Blot, cells were washed first with 1xPBS, and then lysed with ice-cold IP lysis/wash buffer (25mM Tris-HCl, 150mM NaCl, 1mM EDTA, 1% w/v NP-40, 5% w/v glycerol, 1µg/mL Leupeptin, 1µg/mL Pepstatin A, 0.1mM PMSF, pH 7.4).
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4

miRNA Mediated Regulation of NFIX in SSCs

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The human SSC line was seeded in a 48-well culture plate. Approximately 24 hr later, miRNA mimics were first transfected to the cells using lipofectamine 3000 transfection agent (Life Technologies, Carlsbad, CA, USA), according to the manufacturer’s protocol. Then 10 hr later, 500 ng plasmids with the binding sequence in 3′ UTRs of NFIX, Firefly Luciferase (reporter), and Renilla Luciferase (internal control) (pMIR-GIO, Genecreate, Wuhan, China) were transfected to human SSCs by lipofectamine 3000 reagent (Life Technologies, Carlsbad, CA, USA). Cells were lysed after 48 hr of transfection, and luciferase activity was measured using the tube luminometer (Berthold, Germany), according to the manufacturer’s protocol. Data were normalized to miRNA mimic control-transfected cells.
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5

Transfection and Lentiviral Transduction of Human SSCs

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SiRNAs, miRNA mimics and inhibitors were purchased from GenePharma (Shanghai, China). The oligonucleotides of miRNA mimics, inhibitors and siRNAs were shown in Table 2. Human SSC line was seeded at 1 x 105/cm2 density and cultured in DMEM/F12 with 10% FBS overnight.
Transfection of miRNA mimics or inhibitor and siRNAs was performed using lipofectamine 3000 transfection agent (Life Technologies, Carlsbad, CA, USA). After 48 hr of culture, cells were harvested for subsequent analyses.
The lentivirus, namely PGMLV-CMV-MCS-EF1-ZsGreen1, was purchased from Jiman Biotechnology CO., LTD (Shanghai, China). Human SSC line was plated at a density of 5 × 105 cells in 100 mm plates, and these cells were cultured with DMEM/F12 and 10% FBS overnight. Culture medium was changed with fresh DMEM/F12 containing 108 TU/ml PGMLV-CMV-MCS-EF1-ZsGreen1 and 10 μg/ml polybrene, and the cells were incubated at 37° C in 5% CO2 overnight. After 24 hr of culture, the medium was changed with fresh DMEM/F12 and 10% FBS, and the expression of ZsGreen1 was detected under a fluorescence microscope (Nikon Eclipse Ti-S, Nikon Corporation, Tokyo, Japan). The infected cells were cultured and expanded in DMEM/F12 medium supplemented with 10% FBS and 1% antibiotic containing penicillin and streptomycin (Gibco).
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6

Modulation of Microglial RORα in Parkinson's

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Mouse microglia cell line BV-2 was obtained from Procell Life Science & Technology Co., Ltd. (Wuhan, China). The cells were cultured in dulbecco’s modified eagle medium (DMEM, Gbico) supplemented with 10% Fetal bovine serum (FBS, Biological Industries) and 1% penicillin/streptomycin (P/S, Servicebio) at 37 °C in a 5% CO2 incubator. Culture medium changed once every two days. In order to explore the varying expression of RORα in vitro, BV2 cells were seeded into 6-well plates at the density of 5 × 105/ml and treated with different concentrations of MPP+ (0,10,20,50 μM, Sigma, D048) for a duration of 24 h. In order to verify the neuroprotective effect, MLT (50 μM), SR3335 (10 μM), SR1078 (5 μM) was used for pre-treatment half an hour before MPP+ (50 μM) intervention. Constant volume of phosphatic buffer solution (PBS) or DMSO was used as control. SiRNA-mediated knockdown of RORα was conducted using Lipofectamine 3000 transfection agent (Invitrogen) according to the manufacturer’s protocol. All the samples were collected 24 h after MPP+ treatment for following experiments.
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7

Alkaline Phosphatase Activity Assay for Transfected Human MSCs

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Human MSCs cultured in ODM were transfected with miR-130a mimics or inhibitor, miR-27b mimics or inhibitor and its negative controls (Applied Biosystems/Ambion, Austin, TX, United States) using the Lipofectamine 3000 transfection agent (Invitrogen, Carlsbad, CA, United States). The alkaline phosphatase activity was measured using an assay kit (Colorimetric; Abcam). At indicated times, the conditioned medium was collected. Into a 96-well plate, 80 μl of samples was added followed by the addition of 50 μl of a 5 mM pNPP solution to each well. The reaction mixture was incubated at 25°C for 60 min and the reaction was stopped by adding 20 μl of the stop solution followed by gently shaking of the plate. The p-nitrophenol product, which was generated via enzymatic hydrolysis of the p-nitrophenylphosphate substrate, was detected at OD 405 nm using a microplate reader synergy HTX Multi-Mode Reader (BioTek Instruments, VT, United States).
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8

miR-34a Transfection in HEI-OC1 Cells

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miR34a mimic or inhibitor and negative control were purchased from Ruibo Biology Technology Company (Ruibo, Guangzhou, China). HEI-OC1 cells were plated into 6-well plates at a density of 1.5 × 105/well. Cells were grown to 50% confluence and then transfected with 5 µM miR34a mimic or 10 µM inhibitor using serum-free Opti-MEM (Gibco, USA) and Lipofectamine 3000 transfection agent (Invitrogen, USA) following the manufacturer’s instructions. Negative controls were generated using mimic or inhibitor control with the same procedure. Cells were incubated with the transfection mixture for 8 h at 37 °C, then replaced with normal DMEM and further incubated for 40 h.
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9

RAW264.7 Cells Transfection and LPS Stimulation

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Transfection was performed using Lipofectamine 3000 transfection agent (Invitrogen, Grand Island, NY, USA) according to the manufacturer's instructions. Then, RAW264.7 or 293T cells were transfected with miR-155 mimic (50 nmol/L) or a negative control (NC) designed and provided by RiboBio. After transfection, the media were substituted with fresh incubation media containing FBS (BI), and the cells were incubated at a 37 °C and 5% CO2 incubator for 6 h. Then, the cells were stimulated with LPS (1 μg/mL) and incubated with YD for 48 h. For each variant, three independent transfections were performed.
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10

Investigating Osteopontin's Role in A549 Cell Response to Cisplatin

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A549 cells were cultured in 6-well plates and divided into normal control, blank interference control (shRNA-NC), interference (shRNA-OPN), blank expression control (NC), overexpression (OPN), control+cis-platinum (DDP), shRNA-NC+DDP, shRNA-OPN+DDP, OPN+DDP, and NC+DDP groups. Cells in shRNA-NC/shRNA-NC+DDP, shRNA-OPN/shRNA-OPN+DDP, NC/NC+DDP, and OPN/OPN+DDP were transfected with 20 nM of shNC-pGreenpuro, shOPN-pGreenpuro, plvxpuro, and OPN-plvxpuro, respectively using Lipofectamine 3000 transfection agent (Invitrogen) according to the manufacture’s instructions. After transfection, all DDP groups were cultured in medium supplemented with 5 µM DDP, and other groups were cultured in normal medium. Cells were incubated for 48 h and subjected to further experiments.
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