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2 protocols using cs 9662

1

Comprehensive Protein Analysis Protocol

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Naproxen (>99% purity; TCI America, Oregon, USA), EDTA, EGTA, Sodium orthovanadate, Igepal CA-630, Triton X-100,) Complete Protease inhibitor tablet and PhosSTOP phosphate inhibit tablet (Sigma) were purchased. Primary antibodies against PCNA (ab-29), cyclin D1 (ab-134175), caspase-9 (ab-52298), and IL-10 (ab-133575) were purchased from Abcam (MA, USA). Antibodies against caspase-3 (cs-9662), p21 (cs-2947), PARP (cs-9542), actin (cs-4970), cre (cs-15036s), RalA (cs-4799s), PI3K (cs-4292s), and horseradish-peroxidase-conjugated secondary antibodies (anti-rabbit, -goat, and –mouse) were purchased from Cell Signaling Technology (Beverly, MA, USA). Primary antibody against p21 (sc-397), caspase-3 (sc-397; for immunohistochemistry [IHC]), and COX-2 (sc-7951) was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Prostaglandin E2 ELISA kit (Cat. No. 514010) and mouse CXC-Chemokine receptor 4 (CXCR4) ELISA kit (Cat. No. MBS701736) were purchased from Cayman Chemical Company (Ann Arbor, MI) and MyBiosource.com (San Diego, USA). The Histostain-Plus 3rd Gen IHC Detection Kit (Life Technologies, NY, USA) and DeadEnd Colorimetric TUNEL system (Promega, Wisconsin, USA) were purchased.
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2

Muscle Protein Signaling Analysis

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For immunoblotting, snap frozen muscle samples were homogenized in 6 μL/mg muscle of ice cold lysis buffer with protease and phosphatase inhibitors and then centrifuged at 15,000xg for 40 min at 4°C. Supernatant was stored at -80°C until assayed for protein content using the bicinchoninic acid technique with BSA as a standard. Twenty-five μg of mixed muscle protein lysate were resolved on 4-12% SDS-PAGE gels and transferred to PVDF membranes. To assess inflammatory/proteolytic and anabolic signaling, antibodies for phosphorylated (Ser536) (CS-3033) and total NFκB p65 (CS-8242), TNF receptor 1 (TNFR1; CS-3736), caspase-3 (CS-9662), phosphorylated (Ser421/Thr424) (CS-9204) and total p70S6K (CS-2708), ribosomal protein S6 (CS-2217) and eIF2Bɛ (CS-3595) were purchased from Cell Signaling Technologies (Danvers, MA). Primary antibodies were diluted 1:1000 in PBST and 5% goat serum (monoclonal antibodies) or 2% milk/2% BSA (polyclonal antibodies). HRP-conjugated secondary antibody (Pierce Thermo Scientific, Rockford, IL) was used at 1:50,000 (w/v) followed by chemiluminescent detection in a BioRad (Hercules, CA) ChemiDoc imaging system with band densitometry performed using BioRad Quantity One software (software package 4.5.1) as detailed previously 34 (link).
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