The largest database of trusted experimental protocols

10 protocols using nir apo

1

Cryosectioning and Immunofluorescence of Retina

Check if the same lab product or an alternative is used in the 5 most similar protocols
After fixation, the fixative below the explant filter is removed and replaced by 30% sucrose and incubated overnight at 4 °C. After snap freezing the samples in Tissue-Tek® O.C.T. (Sakura) with liquid nitrogen, 14 µm sections were cut with a cryostat (Leica). For reliability of our results, we applied the workflow drawn in Figure 2(C): 16 sections were analyzed per retina, resulting from 4 distinct retina locations. These retinal sections were permeabilized with 0.1% Triton for 5 min prior to a 1 hour incubation at room temperature with 5% goat serum in PBS as a blocking step. Next, sections were incubated overnight at 4 °C with 1:200 rabbit antibody against Collagen IV. Finally, after a 1 hour incubation at room temperature with goat anti-rabbit Alexafluor 647 conjugated secondary antibody and 10 µg/ml Hoechst the sections were mounted with Vectashield (Vector Laboratories) and prepared for imaging. The ‘cryosection imaging’ was done with a confocal microscope (C1-si, Nikon) using a 10× objective (CFI Plan Apochromat, Nikon) and a 60× water objective (NIR Apo, Nikon).
+ Open protocol
+ Expand
2

Two-Photon Excitation Imaging of Labeled Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
We used a two-photon excitation scanning microscope controlled by Slidebook (ver. 6, 3i) with a Ti:sapphire laser (Chameleon Vision, Coherent) at 920 nm and a 40× objective (0.8 numerical aperture, NIR Apo, Nikon). For each brain area imaged, we aimed to capture the full extent of the volume of labeled neurons, using a maximum step-size of 4 μm between imaging planes, and maintained a volume-rate of at least 1 Hz. Image resolution varied depending on the number of planes captured but was not less than 100 pixels in the longest dimension. We recorded frame capture markers and stimulus events on a DAQ (6259, NI) sampling at 10 kHz.
+ Open protocol
+ Expand
3

Confocal Microscopy for Ca2+ Imaging and Hair Bundle Measurements

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples were imaged with a laser scanning confocal microscope (Zeiss LSM 780) controlled with Zen 2012 black edition software (Zeiss). Ca2+ imaging with Asante Calcium Red and hair bundle displacements were measured with a 40× water immersion, 0.80-N.A. objective lens (Zeiss Achroplan); FCS measurements were taken with a 60×, 1.0-N.A. water immersion objective (Nikon NIR APO). All images were processed in custom scripts written in MATLAB (The MathWorks).
+ Open protocol
+ Expand
4

Fluorescence Microscopy of Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were imaged with an Andor Neo sCMOS camera on an inverted microscope (Eclipse TE2000-U, Nikon) using a 60× water dipping objective, NA = 1.0, with a ceramic coating (NIR Apo, Nikon). The microscope's top lamp (filament) was used for bright field imaging and a CoolLED (pE-300 ultra, BergmanLabora) with wavelengths of (525–660 nm, GYR) used in combination with TRITC and FITC filter cubes.
+ Open protocol
+ Expand
5

Multichannel Calcium Imaging in Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Imaging was conducted using a microscope setup which consists of 8 kHz resonant galvanometer (Bruker) mounted to a mirror-based multi-photon microscopy system (Prairie Technologies) and an ultra-fast pulsed laser beam (920-nm wavelength; Chameleon Ultra II, Coherent, 20–40-mW average power at the back focal plane of the objective) controlled with an electro-optical modulator (Conoptics, Model 302 RM). GCaMP fluorescence was excited through a 40x water immersion objective (Nikon NIR Apo, 0.8 NA, 3.5 mm WD) and fluorescence signals detected with photomultiplier tubes (Hamamatsu 7422P-40), acquired with PrairieView software (Prairie) at 30fps frame rate (512×512 pixels, 1.3 μm/pixel). A custom dual stage preamp (1.4×105 dB, Bruker) was used to amplify signals prior to digitization. Two goniometers (Edmund Optics) were used to adjust the angle of each mouse’s head in order to achieve the same imaging plane over multiple sessions.
+ Open protocol
+ Expand
6

Calcium Imaging of Visual Cortex

Check if the same lab product or an alternative is used in the 5 most similar protocols
The fluorescent Oregon-Green BAPTA1 AM (OGB-1 AM, O6807, Molecular Probes) was bulked-loaded in the visual cortex as described previously (Stosiek et al., 2003 (link)). Anesthesia level was continuously monitored by keeping the breathing rate at 100 – 110 breaths/min. High-speed two-photon Ca2+ imaging was performed in layer 2/3 (150 to 350 µm from the pial surface) with an upright LaVision BioTec TrimScope II resonant scanning microscope, equipped with a Ti:sapphire excitation laser (Chameleon Ultra II, Coherent) and a 25x (1.1 N.A., MRD77220, Nikon) or 40x (0.8 N.A., NIRAPO, Nikon) objective. The laser was tuned to 800 nm and fluorescence emission was isolated using a band-pass filter (525/50, Semrock) and detected using a GaAsP photomultiplier tube (PMT; H7422-40, Hamamatsu). The TriM Scope II scan head, equipped with a resonant scanner, imaged time-lapses (512 × 512 pixels,~440 × 440 μm field of view) at a maximum frame rate of 30.4 Hz. Time lapses were recorded for 5 – 8 min on average. Imspector software (LaVision BioTec) was used for microscope control and image acquisition.
+ Open protocol
+ Expand
7

Multichannel Calcium Imaging in Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Imaging was conducted using a microscope setup which consists of 8 kHz resonant galvanometer (Bruker) mounted to a mirror-based multi-photon microscopy system (Prairie Technologies) and an ultra-fast pulsed laser beam (920-nm wavelength; Chameleon Ultra II, Coherent, 20–40-mW average power at the back focal plane of the objective) controlled with an electro-optical modulator (Conoptics, Model 302 RM). GCaMP fluorescence was excited through a 40x water immersion objective (Nikon NIR Apo, 0.8 NA, 3.5 mm WD) and fluorescence signals detected with photomultiplier tubes (Hamamatsu 7422P-40), acquired with PrairieView software (Prairie) at 30fps frame rate (512×512 pixels, 1.3 μm/pixel). A custom dual stage preamp (1.4×105 dB, Bruker) was used to amplify signals prior to digitization. Two goniometers (Edmund Optics) were used to adjust the angle of each mouse’s head in order to achieve the same imaging plane over multiple sessions.
+ Open protocol
+ Expand
8

In Vivo Fluorescence Imaging of Probe 9

Check if the same lab product or an alternative is used in the 5 most similar protocols
Probe 9 (1.0 mg/kg in a fresh solution containing 20% cremorphor, 20% DMSO and 60% PBS buffer) was injected intravenously at time 0 min by a bolus injection during image acquisition. The fluorescence excitation was 615 nm (ANDOR, Sona). Imaging was performed using an upright microscope (Nikon technologies) equipped with a 4 × water immersion objective (Nikon NIR Apo). Images were collected every 5 seconds per frame 512×512 μm matrix, and last for 20 min. Images were analyzed with ImageJ software.
+ Open protocol
+ Expand
9

Striatal Cholinergic Interneuron Electrophysiology

Check if the same lab product or an alternative is used in the 5 most similar protocols
Electrophysiological recording in the striatal ChIs was conducted as described previously (Zhao et al., 2016 (link)). Briefly, the pipettes had a resistance of 3–5 MΩ when filled with the internal solution consisted of (in mM): 80 CsOH, 80 gluconate acid, 30 CsCl, 40 HEPES, 10 tetraethylammonium chloride (TEA-Cl), 5 EGTA, 12 Na2phosphoceatine, 1 MgCl2, 2 Mg-ATP, 0.5 Na-GTP (265–270 mOsm/l), which was adjusted with CsOH to pH 7.3 (Miki et al., 2013 (link)). Slices were bathed in an external solution of (in mM): 105 NaCl, 20 TEA-Cl, 2 CaCl2, 6 MgCl2, 6 KCl, 26 NaHCO3, 10 glucose, 3 myo-inositol, 2 sodium pyruvate, 0.5 ascorbic acid, 1.25 NaH2PO4, 0.0005 tetrodotoxin (TTX, pH = 7.2 with TEA-OH, Miki et al., 2013 (link)). The slice in the recording chamber was visualized with a 40 × water-immersion objective (NIR Apo, Nikon, Japan) using standard infrared and differential interference contrast (IR-DIC) microscopy and a CCD camera. Cells in the striatum approximately 50 μm beneath the slice surface were patched. Electrophysiology was performed using an Axon 200B amplifier (Molecular devices, Foster city, CA, United States) and Clampex 10.1 software (Molecular devices) at room temperature 23 ∼ 25°C (Hawkins et al., 2015 (link)). Data were filtered at 2 kHz and digitized at 10 kHz online. Only those recordings with stable holding currents and access resistance were accepted.
+ Open protocol
+ Expand
10

Direct Imaging of LAB Aggregations

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the direct imaging of CMC-mediated LAB aggregations in suspension, the schematic illustration of the DFM setup is shown in Fig. 1. A mixture of 5 μL of a LAB suspension and 200 μL physiological saline solution (0.9% sodium chloride) containing 0.1% CMC or no CMC was added to the silicon rubber chamber adhered onto a glass slide, and LABs in suspension were observed at room temperature.
In DFM, only light scattered by the structure is collected in the detection path, while directly transmitted light is blocked using a dark-field condenser. The images were acquired using a NIKON ECLIPSE 80i with a ×40 water immersion objective (NIKON, NIR Apo), a dark field condenser, a 100-W halogen lamp and a NIKON DS-Ri1 digital camera.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!