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103 protocols using fura 2 am

1

Intracellular Zinc and Calcium Imaging

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The change in [Zn2+]i was measured using FluoZin-3 (35 (link)). Cells were incubated with 10 μM FluoZin-3AM for 30-min in SBS at room temperature. Upon excitation at a wavelength of 488 nm, FluoZin-3 fluorescence signals emitted at wavelengths longer than 510 nm were collected at 0.1 Hz using the Argus/HiSCA imaging system (Hamamatsu Photonics, https://www.hamamatsu.com/jp/en.html) driven by Imagework Bench v6.0 (INDEC Medical Systems, http://www.indecmedical.com/). Changes in fluorescence intensity were calculated as Zn2+i (F/F0) by the normalization at time zero. For each analysis, fluorescence signals were averaged over the whole-cell area. To quantitatively measure changes in Zn2+ levels, responses from 50 cells within a single coverslip were averaged, and this protocol was replicated to change the coverslip. To measure changes in intracellular Ca2+ ([Ca2+]i), HEK cells, which were loaded with 10 μM Fura2-AM (DOJINDO) in SBS for 30 min at room temperature, were superfused with SBS for 10 min to remove residual Fura2-AM in the recording chamber. Fura2 fluorescence signals, elicited upon excitation at wavelengths of 340 nm and 380 nm, were recorded at 0.1 Hz. Changes in the fluorescence intensity ratio were calculated as Ca2+i (F340/F380) and analyzed in the similar manner to [Zn2+]i.
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2

Fura-2AM Calcium Imaging of MCF7 Cells

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A recording buffer containing 138 mM NaCl, 5 mM KCl, 1 mM MgCl2, 5 mM glucose, 10 mM Hepes (pH 7.6), 1.5 mM CaCl2, and 0.1% BSA was prepared. MCF7 cells were seeded at a density of 1.5 × 104 cells per well in a 96-well plate. 2 d later, to prepare Fura-2AM loading buffer, Fura-2AM (F015; Dojindo) was dissolved in the recording buffer at a concentration of 5 μM and sonicated. The cells were incubated with Fura-2AM loading buffer for 1 h at room temperature. After incubation, the cells were washed twice with a recording buffer. Before measurement, the recording buffer was replaced with a fresh recording buffer, and the measurement was started 5 min after the replacement. The excitation wavelengths were set at 340 and 380 nm, whereas the emission was measured at 510 nm. The measurement was performed using an ARVO X4 plate reader (Revvity).
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3

Fura-2 Calcium Imaging in Cells

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Cells were loaded with 10 μM Fura2-AM (Dojindo, Kumamoto, Japan) in SBS for 30 min at 24–26 °C, and thereafter, superfused with SBS for 10 min to washout the Fura-2AM. Fura-2 fluorescence signals were measured every 5 s using the Argus/HisCa imaging system (Hamamatsu Photonics, Hamamatsu, Japan), driven by Imagework Bench 6.0 (INDEC Medical Systems, Santa Clara, CA, USA). For each analysis, the whole cell area was chosen as the region of interest to average the fluorescence ratio. For quantitative measurement of change in Ca2+ response, we collected 50 and 20 single cells on one coverslip for analysis of HEK and MC3T3-E1 cells, respectively, and repeated the same experiment with the other coverslips to reduce variation. For constructing a concentration-response curve, a set of the summarized data was fitted to a standard Hill equation (Origin J9.1, LightStone, Tokyo, Japan). To apply laminar fluid flow, cells were maneuvered to the exit of a thin capillary tube with tip diameter of 350 μm, out of which SBS flowed at 3.33, 7.67, and 16.67 μL/s for 5 s. Calculation of shear stress (τ) was done using the Hagen-Poiseuille equation (τ = 4 μQ/πR3), where μ is dynamic viscosity, Q is flow rate, and R is radius of the capillary tube [28 (link),42 (link)].
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4

GABA-Induced Calcium Signaling in OUMS-27 Cells

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The intracellular Ca2+ concentration, [Ca2+]I, in drug-treated OUMS-27 cells, was measured by Fura-2 AM, a calcium-sensitive dye (Dojindo, Kumamoto, Japan). Briefly, OUMS-27 cells were loaded with 5 μM Fura-2 AM in loading buffer containing 0.01% pluronic F-127 (Dojindo) for 30 min at 37 °C. After washing Fura-2 AM out of the loading buffer, the relative transient calcium concentration (OD340nm/OD380nm excitation ratio) was recorded before and after the addition of 10 mM GABA (Sigma-Aldrich) in a perfusion chamber using the AQUACOSMOS/RATIO, C7773 (Hamamatsu photonics, Hamamatsu, Japan). Recording was continued after washing the 10 mM GABA out of the buffer. [Ca2+]I after pretreatment with 1 μM CGP and application of 10 mM GABA was recorded using a similar method.
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5

Measuring Neuronal Cytosolic Calcium

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Cytosolic Ca2+ concentration ([Ca2+]i) was measured by ratiometric fura-2 microfluorometry in combination with digital imaging, as previously reported (Kohno et al., 2003 (link), 2007 (link)). Briefly, after incubation with 2 μM fura-2/AM (Dojindo, Kumamoto, Japan, F016) for 45 min, the cells were mounted in a chamber and superfused with HKRB at 1 ml/min at 33°C. Fluorescence images due to excitation at 340 and 380 nm were detected every 10 s with a cooled charge-coupled device camera (ORCA-R2 C10600, Hamamatsu Photonics, Hamamatsu, Japan), and the ratio image was produced by an Aquacosmos (Hamamatsu Photonics). The data were obtained from single cells identified as neurons by previously reported procedures (Kohno et al., 2003 (link), 2007 (link)); briefly, they have a relatively large diameter (≥10 μm), and their cell bodies are clear and round on phase-contrast microscopy. Cells with astrocyte-like flat morphology were excluded. The data were obtained from cells that met these criteria for neurons.
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6

Simultaneous Fura-2 Calcium Imaging of HEK293 Mutants

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The transfected HEK293 cells were seeded on glass coverslips (Matsunami) coated with poly-L-lysine solution (Sigma-Aldrich) then incubated for 4–10 h. HEK293 cells or cultured neurons were loaded with 5 µM Fura-2 AM (Dojindo) for 15–20 min in the growth medium. Fura-2 fluorescence was measured in HBS (107 mM NaCl, 6 mM KCl, 1.2 mM MgSO4, 2 mM CaCl2, 11.5 mM glucose, and 20 mM HEPES, pH 7.4). Fluorescence images were obtained using a fluorescence microscope (IX71, Olympus) equipped with a complementary metal-oxide semiconductor (CMOS) camera (ORCA-flash 4.0, Hamamatsu Photonics) under xenon-lamp illumination, and analyzed with a video imaging system (AQUACOSMOS, Hamamatsu Photonics) according to the manufacturer’s protocol. The ratio of 340:380 nm fluorescence was determined from the images, on a pixel-by-pixel basis. To facilitate the screening assay in HEK293 cells, three different cell lines that expressed one of the constructs were co-cultured on a glass coverslip. Each mutant can be distinguished by co-transfected fluorescent proteins that have distinct colors as a marker, and the glutamate responses of three different mutants were assayed simultaneously. The Δratio was defined as the difference between the maximum and the initial ratio values. The Δratio was fitted with KaleidaGraph using following equation (1): a + (b-a)/(1 + (x/c)^d), and the EC50 value was calculated.
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7

Fura-2 Calcium Imaging of mGlu1 Mutants

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The transfected HEK293 cells were seeded on glass coverslips (Matsunami) coated with poly-L-lysine solution (Sigma) and incubated for 4 h at 37°C in a humidified atmosphere of 95% air and 5% CO2. The calcium indicator Fura-2 AM (Dojindo) was loaded to the cells at 5 μM for 20–30 min. The imaging experiment was carried out in HBS buffer (20 mM HEPES pH 7.4, 107 mM NaCl, 6 mM KCl, 1.2 mM MgSO4, 2 mM CaCl2, 11.5 mM glucose). The fluorescence images and the Fura-2 ratio were measured using a fluorescence microscope (IX71, Olympus) equipped with a complementary metal-oxide semiconductor (CMOS) camera (ORCA-flash 4.0, Hamamatsu Photonics) under xenon-lamp illumination, and analyzed with a video imaging system (AQUACOSMOS, Hamamatsu Photonics) following the manufacture’s instruction. In imaging experiments, three different HEK293 cells transfected with one of the mGlu1 mutants were co-cultured on a glass coverslip, and each mutant was visually distinguished by the transfection markers. These three different cells were assayed simultaneously. The Δratio value was defined as the difference between the maximum ratio value after adding the reagent (metal ion or complex, or glutamate) and the average ratio before adding the reagent. The Δratio was fitted with KaleidaGraph to calculate the EC50 value using the equation: a + (b-a)/(1+(x/c)^d).
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8

Chemical Agents for Cell Biology

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Paxilline (PAX; Cayman Chemical), NS1619 (Abcam), DOX hydrochloride (FUJIFILM Wako Pure Chemical), PAC (FUJIFILM Wako Pure Chemical), CIS (FUJIFILM Wako Pure Chemical), DiBAC4(3) (DOJINDO), Fura‐2 AM (DOJINDO), and siRNA for FBXW7 (Thermo Fisher Scientific) were purchased. HDAC/SIRT inhibitors (vorinostat and NCO‐01) were provided by Prof. Takayoshi Suzuki (Osaka Univ., Osaka, Japan). The other chemicals used in the present study were from Sigma‐Aldrich, FUJIFILM Wako Pure Chemical, and Nacalai Tesque unless otherwise stated.
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9

Fura-2-AM Intracellular Calcium Measurement

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Naive CD4+ T cells isolated from PB of healthy donors were suspended at 3 × 106 cells/ml in Hank's balanced salt solution (HBSS) containing 1 mg/ml of bovine serum albumin (BSA) and 10 mM HEPES, pH 7.4 (HBSS-BSA) and incubated with 1 mM Fura-2-AM (Dojindo, Kumamoto, Japan) at RT for 30 min in the dark. After washing twice with HBSS-BSA, cells were suspended in HBSS-BSA at 2.5 × 106 cells/ml. 2 ml of the cell suspension in a quartz cuvette was placed in a luminescence spectrometer (RF-5000, Shimadzu, Kyoto, Japan) and fluorescence was monitored at an emission wavelength of 510 nm, and excitation wavelengths of 340 and 380 nm every 20 ms. Calibration of fluorescence in terms of [Ca2+]i was calculated from the ratio 340/380 excitation fluorescent values.
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10

Measuring Intracellular Calcium Dynamics

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Changes in intracellular calcium were measured with the fluorescent calcium indicator, Fura-2, as previously described (Masuoka et al., 2015 (link), 2017 (link)). For the microscopic fluorometric measurement, cultured trigeminal ganglion neurons were washed twice with Krebs–Henseleit solution and incubated for 1 h in a solution containing 3 μM of Fura-2-acetoxymethyl ester (Fura-2 AM; Dojindo Laboratories, Kumamoto, Japan) and 0.005% Cremophor EL (Sigma–Aldrich). After incubation, the cells were washed in Krebs–Henseleit solution for 30 min, and culture dishes were placed on the stage of an inverted microscope (ECLIPSE TE 300, Nikon, Tokyo, Japan) equipped with a 20× S-fluor objective. Fluorescence images were recorded and analyzed using a video image analysis system (HCimage, Hamamatsu Photonics, Hamamatsu, Japan). The experimental agents were dissolved in Krebs–Henseleit solution and delivered by continuous perfusion in the recording chamber with a peristaltic pump (2 ml/min). The perfused solutions were maintained at 34°C with a temperature controller (TC-344C and SH-27B, Warner Instruments). Image pairs of Fura-2 fluorescence were captured every 10 s at an emission wavelength of 510 nm by exciting Fura-2 at 340 and 380 nm. The 340–380 nm fluorescence ratio (F340/F380) was used as a parameter of intracellular calcium concentration.
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