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Recombinant cas9 protein

Manufactured by Integrated DNA Technologies

Recombinant Cas9 protein is a purified, engineered version of the Cas9 enzyme derived from the bacterial CRISPR-Cas9 system. The core function of Recombinant Cas9 protein is to facilitate the targeted cleavage of DNA sequences when paired with a guide RNA.

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10 protocols using recombinant cas9 protein

1

Generation of Rpl3 and Rpl3l Knockout Mice

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All animal experiments were approved by the animal ethics committee of Kyushu University (A20-169-0, A21-271-0, and A22-013-0) and were conducted in compliance with the university guidelines and regulations for animal experimentation. For generation of Rpl3–/– and Rpl3l–/– mice, ribonucleoprotein was prepared by mixing the CRISPR RNA (crRNA) and transactivating crRNA (tracrRNA) with recombinant Cas9 protein (Integrated DNA Technologies) (Supplementary Data 9). Mouse zygotes of the C57BL/6 J strain were subjected to electroporation with each ribonucleoprotein complex. All mice were housed in the specific pathogen-free animal facility at Kyushu University in accordance with institutional guidelines under the following conditions: ambient temperature of 22 °C, 50% to 60% humidity, 12 h-dark/12 h-light cycle, and free access to water and rodent chow CA-1 (CLEA Japan). Male mice were used for all experiments, given that male mice are commonly used for cardiac analysis. Mice were euthanized in a CO2 chamber for experiments.
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2

CRISPR-Mediated Mouse Knockout Generation

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All animal experiments were approved by the animal ethics committee of Kyushu University (A20-169-3) and were conducted in compliance with the university guidelines and regulations for animal experimentation. For generation of Kastor–/–, Polluks–/–, Kastor–/–/Polluks–/–, Vdac3–/–, KastorFLAG/+, and PolluksFLAG/+ mice, ribonucleoprotein (RNP) was prepared by mixing the CRISPR RNA (crRNA) and transactivating crRNA (tracrRNA) with recombinant Cas9 protein (Integrated DNA Technologies) (Supplementary Data 5). Single-stranded oligodeoxynucleotide (ssODN) homology repair templates were synthesized as 200-nt sequences (Supplementary Data 5). Mouse zygotes of the C57BL/6J strain were subjected to electroporation with each RNP with or without the corresponding ssODN. All mice were housed in the specific pathogen-free animal facility at Kyushu University in accordance with institutional guidelines under the following conditions: 22 °C ambient temperature, 50–60% humidity, 12 h dark/light cycle, and free access to water and rodent chow CA-1 (CLEA Japan). B6D2F1/Jcl (C57BL/6N Jcl × DBA/2N Jcl) female mice were used for the fertility test, and all other experiments were performed on the C57BL/6J background.
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3

CRISPR-Cas9 Mediated FKBP51 Knockout in HaCaT Cells

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CRISPR/Cas9 gene-editing was used to ablate FKBP51 in HaCaT cells. Recombinant Cas9 protein and CRISPR crRNA were purchased from Integrated DNA Technologies (Coralville, IA). The gRNAs were designed using publicly accessible engines (http://crispr.mit.edu/; http://chopchop.cbu.uib.no/ (http://www.uib.no/en/persons/) as described [50 (link)–52 (link)]. Only top ranked gRNA with no off-target effects confirmed by two design sites were selected for the knock-out procedure (gRNA1, FKBP51 exon 2, ATTACCTCCAAAAAAGACAG; gRNA2, FKBP51 Exon 3, GGTGAGGAAACGCCGATGAT; gRNA3, FKBP51 Exon 4, GTCATCAAGGCATGGGACAT). HaCaT cells were transiently transfected with ribonucleoprotein complex (RNPC) using RNAi-Max transfection reagent (Fisher Scientific). The advantages of RNPC (with Cas9 protein and synthetic gRNAs) versus standard vector-based CRISPR approaches include rapid RNPC degradation after gene editing resulting in minimal Cas9-gRNA off-target effects and cytotoxicity. Single-cell colonies were established from CRISPR-edited cell cultures and analyzed by sequencing and Western blotting to verify the knock-out of FKBP51 gene. Cas9-only-treated cells were used as a control. Experiments were performed in two different FKBP51 KO clones (L1 and L2).
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4

Electroporation-Mediated CRISPR Delivery in SH-SY5Y

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Custom crRNA’s, tracrRNA and recombinant Cas9 protein were acquired from Integrated DNA Technologies. The sequences for the crRNA’s are shown in Table 1A. Custom crRNA’s and tracrRNA’s were combined according to the manufacturers’ protocol. RNP complexes were made according to the manufacturer's protocol in a 6:1 ratio (gRNA:Cas9 protein). Electroporation was performed on 4 × 105 cells using the Neon transfection system (Thermo Fisher Scientific) with the protocol for SH-Y5Y cells (1200 V, 20 ms pulse, three times).
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5

Generation of TUBL KO and FLAG-tagged Mice

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For generation of TUBL knockout mice and knock-in mice with a FLAG tag sequence at the COOH-terminus of TUBL, ribonucleoprotein (RNP) was prepared by mixing the CRISPR RNA (crRNA) and trans-activating crRNA (tracrRNA) with recombinant Cas9 protein (Integrated DNA Technologies) (S5 Table). Single-stranded oligodeoxynucleotide (ssODN) homology repair templates were synthesized as 200-nt sequences (S5 Table). Mouse zygotes were subjected to electroporation with the RNP and ssODN.
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6

CRISPR-mediated gene knockout

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CRISPR RNA (crRNA) were designed using the MIT CRISPR tool (crDDI2-ASP: TGGCAATCCCTGCCCACCGA) or obtained as predesigned crRNA from Integrated DNA Technologies (crNFE2L1.1AA: GCACGGAACCTGCTAGTGGA and crDDI2.AA: GCTCGAAGTCGGCGTCGACC). A nontargeting crRNA was used as negative control (CGTTAATCGCGTATAATACG). ATTO550-labeled trans-activating crRNA and recombinant Cas9 protein were obtained from Integrated DNA Technologies. Gene KO was achieved via transient transfection of a complex of crRNA, trans-activating crRNA, and Cas9 via electroporation through the Neon Transfection System (Thermo Fisher Scientific, Waltham, MA). The detailed protocol can be found in supplemental Material. Cells were harvested 1-hour postelectroporation and sorted based on 4′,6-diamidino-2-phenylindole (DAPI) negativity and ATTO550 positivity, as a bulk population or as single cells. Gene target KO was validated by immunoblots and sequencing of a genomic polymerase chain reaction (PCR) amplicon across the edited locus.
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7

CRISPR/Cas9-Mediated Disruption of Zebrafish trrap Gene

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We used a ready-to-use CRISPR/Cas9 system with CRISPR RNA (crRNA), trans-activating crRNA (tracrRNA) and recombinant Cas9 protein to disrupt the zebrafish trrap gene15 (link). Synthetic crRNAs and tracrRNA (Supplementary Table S1) and recombinant Cas9 protein were obtained from Integrated DNA Technologies, Inc. (IDT). Synthetic trrap-crRNA1 (25 pg), trrap-crRNA2 (25 pg) and tracrRNA (100 pg) were injected with recombinant Cas9 protein (1 ng) into one-cell-stage zebrafish embryos. To confirm the phenotypes of the trrap mutants, synthetic trrap-crRNA3 (25 pg), trrap-crRNA4 (25 pg) and tracrRNA (100 pg) were injected with recombinant Cas9 protein (1 ng) into one-cell-stage zebrafish embryos.
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8

Generation of Il1rl1-knockout mouse lines

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Il1rl1-ExAB−/− and Il1rl1-ExC−/− mice were generated in the Transgenics Core Facility of the Max Delbrück Centrum Berlin using established protocols78 . In brief, gRNA sequences with minimal predicted off-target effects were identified using the web-based tool CRISPOR79 (link). Zygotes were collected from C57BL/6 J mice (Charles River), microinjected with synthetic gRNAs (Integrated DNA Technologies) and recombinant Cas9 protein (Integrated DNA Technologies) and subsequently transferred into pseudo-pregnant C57BL/6 J mice. Resulting F0 offspring mice were screened for successful deletion by PCR amplification of WT or knockout alleles. gRNA and PCR primer sequences are listed in Supplementary Table 4.
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9

Generation of Tmem2-FLAG Knock-in Mice

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Pronuclear stage embryos from C57BL6/J mice were purchased from ARK Resource (Kumamoto, Japan). Recombinant Cas9 protein, crRNA and tracrRNA were obtained from Integrated DNA technology. Single-stranded oligodeoxynucleotides for insertion of a FLAG epitope were designed with 30 bp sequence homologies on each side of the Cas9-mediated double strand break (see S2 Table for sequence information). For generation of Tmem2-FLAG knock-in (Tmem2-FLAGKI) mice, we used the Technique for Animal Knockout System by Electroporation (TAKE) [68 (link)]. Briefly, embryos were washed twice with Opti-MEM solution and aligned in the electrode gap filled with 50 μl of Cas9/gRNA(crRNA-tracrRNA complex)/ssODN (200/100/100 ng/μl) mixture. The intact embryos were subjected to electroporation using poring (225V) and transfer pulses (20V). After electroporation, embryos were returned to KSOM Mouse Embryo Media (Millipore Sigma) at 37°C. Genome edited 2-cell embryos were transferred to oviducts of pseudopregnant ICR female mice, and genomic DNA from newborn mice was analyzed by PCR (see S1 Table for primer sequences).
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10

Generation of Tmem2-FLAG Knockin Mice

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Pronuclear stage embryos from C57BL6/J mice were purchased from ARK Resource (Kumamoto, Japan). Recombinant Cas9 protein, crRNA and tracrRNA were obtained from Integrated DNA technology. Single-stranded oligodeoxynucleotides for insertion of a FLAG epitope were designed with 30 bp sequence homology on each side of Cas9-mediated double strand break (see S2 Table for sequence information). For generation of Tmem2-FLAG knockin (Tmem2-FLAG KI ) mice, we used the Technique for Animal Knockout System by Electroporation (TAKE) [58] (link). Briefly, embryos were washed twice with Opti-MEM solution and aligned in the electrode gap filled with 50 μl of Cas9/gRNA(crRNA-tracrRNA complex)/ssODN (200/100/100 ng/μl) mixture. The intact embryos were subjected to electroporation using poring (225V) and transfer pulses (20V). After electroporation, embryos were returned to KSOM media at 37℃. Genome edited 2-cell embryos were transferred to oviducts of pseudopregnant ICR female mice, and genomic DNA from newborn mice was analyzed by PCR (see S1 Table for primer sequences).
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