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6 protocols using bfgf2

1

HNSCC Tumor Sphere Culture Assay

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HNSCC cell lines CAL27 and FaDu were purchased from the American Type Culture Collection (ATCC, Manassas, VA). Cell lines were maintained in Dulbecco’s modified Eagle’s medium (DMEM)/F12, 10% fetal bovine serum (FBS), at 5% CO2 and 37 °C humidified incubators with anti-vibration platform. For the tumor sphere culture assay, single-cell suspensions were resuspended in culture media containing 1% N2 supplement (Gibco), 2& B27supplement, 20 ng/mL basic fibroblast growth factor (bFGF-2, R&D), and 10 ng/mL epithelial growth factor (EGF, R&D) and plated in ultra-low attachment plates (Corning) at a density of 1 × 103 cells per well as previously reported49 (link). Medium was replenished twice a week and spheres counted within 2 weeks. To evaluate the tumor sphere size, cells were plated in 96-well ultra-low attachment plates (Corning), at a density of 1 cell per well. The number and size of spheres formed were evaluated using an inverted microscope.
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2

Generation of Neural Progenitor Cells

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We used our published protocol for the generation of NPCs by neuronal induction from embryoid bodies combined with dual SMAD inhibition and PSA-NCAM magnetic-bead sorting [35] (link). Two iPSC-derived NPC clones from the SNCA-Triplication patient (clones 1754-MIT; 1754-C7) were used for this study. In addition to the sibling control (clone 1761-C1) the NPC clone from a normal control (clone 1815-17-21) was used as an unrelated control cell line. Briefly, NPCs (passage15–30) were seeded at 5×103 cells/mm2 on 300 µg/ml Geltrex (Life Techn. #A10480-02) and propagated in NPC growth medium (Life Technologies: Neurobasal medium #21103; 2mM L-Glutamine #25030; 1X NEAA #111400; 1X B27 #17504-044; and R&D systems: 20 ng/ml bFGF2 #PHG-0263) for up to 15 passages. Near confluent NPC cultures in 6-well plates were passaged with Accutase (Innovative Cell Technologies #AT104).
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3

Pluripotent Stem Cell Culture Protocols

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mESCs, iPSCs and EpiSCs were generated as previously reported.34 ,37 ,70 (link) mESCs and iPSCs were cultured on feeder-free dishes coated with 0.2% gelatin (Millipore, Cat# 901771) in the N2B272i/lif medium, which included N2B27 medium supplemented with 1 μM PD035901 (LC Laboratories, Cat# P-9688), 3 μM Chir99021 (LC Laboratories, Cat# C-6556), and 1 × 103 units/mL hLIF (human Leukemia Inhibitory Factor, Millipore, Cat# ESG1107). EpiSCs were cultured on mouse MEFs (Embryonic Fibroblast cells) inactivated with Mitomycin C (Sigma-Aldrich, Cat# M0503) in N2B27 medium containing 15% KSR (Gibco, Cat# 10828028), 20 ng/mL Activin A (PeproTech, Cat# 100-18B), 12 ng/mL bFGF2 (R&D Systems, Cat# 233-FB) and 5 μM XAV939 (Sigma-Aldrich, Cat# X3004). EpiSCs were passaged every 2–3 days as small clumps with 1.5 mg/mL collagenase IV (Gibco, Cat# 17104-019) or as single cells with TrypLE (Gibco, Cat# 12605010) digestion through adding Y-27632 (TOCRIS, Cat# 1254).
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4

Generating Fabry Disease iPSCs

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Fabry disease (FD) fibroblasts were individually biopsied from four patients under the approval of the AMC Institutional Review Board (2011-0451). Studies using human materials including iPSCs were performed under the approval of the Institutional Review Board of KAIST (KH2016-52). Fibroblasts were cultured in DMEM (Welgene, Seoul, Korea) containing 10% fetal bovine serum (FBS, Invitrogen, Carlsbad, CA), 1% penicillin-streptomycin (Invitrogen) at 37°C, 5% CO2 in air. Retroviruses expressing OCT4, SOX2, cMYC, and KLF4 were transfected into FD fibroblasts to generate iPSCs as previously described [23] (link). Wild type (WT)-iPSCs derived from foreskin fibroblasts (CRL-2097, ATCC, Manassas, VA) were used as a control. iPSCs were cultured in human embryonic stem cell culture medium containing DMEM/F12 (Invitrogen, Carlsbad, CA), 20% KnockOut™ Serum Replacement (Invitrogen), supplemented with 10 ng/mL bFGF2 (R&D systems, Minneapolis, MN), 1% non-essential amino acid (NEAA) (Invitrogen), 1% penicillin and streptomycin (Invitrogen) on mitomycin C-treated MEF-seeded culture plates at 37°C, 5% CO2 in air. After detachment with dispase (Invitrogen), human iPSCs were passaged to fresh plates every 6 d. The GLA mutations were identified from genomic DNAs extracted from FD-iPSCs and fibroblasts by direct sequencing. The primers used for detecting the mutations are listed in Table S1.
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5

Induction and Maintenance of Mouse Naïve ESC-Derived Cell Types

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RSCs, XPSCs, FS cells, and fPSCs were induced and maintained from mouse naïve ESCs under the specific conditions as previously reported (11–14 (link)). Epiblast-like cell (EpiLC) formation was performed as previously described with minor modifications (8 (link)). Briefly, ESCs cultured in 2i/LIF medium were prewashed with DPBS and dissociated into single cells with 0.25% Trypsin-EDTA. 1 105 cells were seeded in the 12-well plate precoated with a 1:100 mixture of Matrigel and DMEM/F12, and supplemented with EpiLC formation medium containing N2B27, 20 ng/ml Activin A (PeproTech, 120–14), 12 ng/ml bFGF2 (R&D Systems, 233-FB), and 1% KSR. During EpiLC formation, the culture medium was replaced every day.
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6

Quantifying Vasculogenic Factors in MEFs

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Protein expression/levels for key vasculogenic factors including vascular endothelial growth factor A (VEGF-A), VEGF-D, and basic fibroblast growth factor (bFGF) was quantified via enzyme-linked immunosorbent assay (ELISA) using the following commercially available kits as per the manufacturer’s instructions: VEGF (reference no. DY493, R&D Systems), VEGF-D (reference no. DY469, R&D Systems), and bFGF2 (ref. no. DY3139-05, R&D Systems). Sham- and EFF-nanotransfected pMEFs and corresponding exosomes were processed to isolate total protein using a lysis buffer containing radioimmunoprecipitation assay buffer (reference no. 89900, Thermo Fisher Scientific), cOmplete Protease Inhibitor Cocktail (reference no. 4693116001, Roche), phosphatase inhibitor cocktail 2 (reference no. P5726-1, Sigma-Aldrich), and 1 mM phenylmethylsulfonyl fluoride. All samples were incubated in lysis buffer for 15 min at 4°C and overnight at −20°C; the samples were subsequently gently vortexed for 15 min and centrifuged at 10,000 rpm and 4°C for 30 min before protein isolation. Protein concentration for all samples was determined via a standard Bradford protein assay (reference no. 500006, Bio-Rad) following the vendor’s protocol, and these values were used to normalize protein loading for each ELISA assays.
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