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Alexa fluor 546 phalloidin

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Alexa Fluor 546 phalloidin is a fluorescent dye conjugate used for labeling and visualizing actin filaments in cells. It binds to F-actin with high affinity and specificity, allowing for the detection and localization of the actin cytoskeleton in fixed and permeabilized samples.

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181 protocols using alexa fluor 546 phalloidin

1

Immunostaining and Actin Staining of Spheroids

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The spheroids were collected and fixed in 4% paraformaldehyde (PFA). After fixation, the samples were permeabilized with 0.1% triton X-100 in PBS for 30 min and washed with PBS 3 times. For immunostaining, non-specific binding during staining was blocked with PBS containing 4% bovine serum albumin at room temperature for 1 h. Then, we added the anti-SOST antibody (Sigma, USA) and incubated at room temperature for 1 h. After washing with PBS 3 times, the samples were treated with the Alexa Flour 488 secondary antibody (Invitrogen, USA), Alexa Fluor 546 Phalloidin (Invitrogen, USA), and DAPI (Sigma, USA) at room temperature for 1 h. After washing with PBS 3 times, the samples were observed by the FLUOVIEW FV3000 (Olympus, Japan). For G-actin (globular) and F-actin (fibrous) staining, the samples were treated with the Deoxyribonuclease I (DNase I), Alexa Fluor 488 conjugate (Invitrogen, USA) and Alexa Fluor 546 Phalloidin (Invitrogen, USA), respectively, and counterstained with DAPI (Sigma, USA) at room temperature for 15 min. After washing with PBS 3 times, the stained samples were mounted on the glass slides for visualization.
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2

Immunofluorescent Staining of TNIP1 in HPV-KER and Skin Cells

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HPV-KER cells were grown on glass sides, fixed with 2% paraformaldehyde (PFA) for 5 min, permeabilized with 0.1% Triton X, 2% PFA-containing phosphate-buffered saline (PBS), and blocked for 2 h at room temperature with PBS containing 1% bovine serum albumin (BSA), 0.05% Triton X 100, and 10% goat serum. Cells were stained overnight at 4°C with anti-human TNIP1 antibody (Sigma Aldrich, St. Louis, MO, United States) or rabbit IgG for isotype control. As a secondary antibody, Alexa Fluor 488 conjugated anti-rabbit IgG, was used for 2 h. Filamentous actin was stained by Alexa Fluor 546® phalloidin (Life Technologies, Carlsbad, United States) diluted 1:100 in PBS containing 1% BSA for 20 min. Nuclei were stained for 10 min with 4′,6-diamidino-2-phenylindole (DAPI) diluted 1:500.
Frozen sections of ex vivo skin models were pre-incubated with PBS for 5 min and fixed and permeabilized with Foxp3 staining buffer set (Thermo Scientific, Rockford, United States) and blocked for 1 h at room temperature with TBS containing 1% BSA and 1% normal goat serum. Cells were stained for 1 h with anti-human TNIP1 antibody or rabbit IgG for isotype control. As a secondary antibody, Alexa Fluor 546 conjugated anti-rabbit IgG (Thermo Scientific, Rockford, United States), was used for 1 h at room temperature. Nuclei were stained for 6 min with DAPI diluted 1:100.
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3

Immunofluorescence Analysis of Tight Junction Proteins

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The rat anti-occludin monoclonal antibody (mAb), rabbit anti-occludin polyclonal antibody (pAb) [17 (link)], rat anti-angulin-1/LSR mAb, rabbit anti-angulin-2/ILDR1 pAb [9 (link)], and rat anti-tricellulin mAb (24–69) [7 (link)] were characterized as described previously. The rabbit anti-cleaved-Caspase-3 (Asp175) pAb (# 9661) was purchased from Cell Signaling Technology (Danvers, MA, USA). Alexa Fluor 546-phalloidin (#A22283), Alexa Fluor 488 goat anti-rabbit IgG pAb (#A11008) and Alexa Fluor 546 goat anti-rat IgG pAb (#A11081) were purchased from Life Technologies (Waltham, MA, USA).
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4

Analyzing Astrocyte and GBM Cell Composition

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To determine the composition of TNTs, astrocytes and GBM cells were seeded onto 24–well glass bottom dishes 15.000 cells/cm2 at a 50:50 ratios and growth for 48 h, subsequently the co-culture system was treated with 4% (w/v) PFA. The cells were then permeabilized with 0.1% (w/v) Triton X-100 in PBS for one minute at room temperature and washed three times with PBS. 1% (w/v) non-fat milk powder was used as a blocking agent and applied for 30 min. The sample as then stained with Alexa Fluor 546 Phalloidin (Life Technologies) and DAPI (Life Technologies) for 45 min, washed three times and stored in fluorescent mounting medium (Dako North America, Carpinteria, CA, USA).
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5

Confocal Microscopy of Podocyte Cytoskeleton

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Confocal microscopy was performed on RPCs cultured on Softslip by using a Leica SP5 AOBS confocal microscope (Leica Microsystems, Wetzlar, Germany) equipped with a Chameleon Ultra-II two-photon laser (Coherent, Milan, Italy). Cells were fixed for 10 min with paraformaldehyde. The following antibodies were used: Anti-paxillin (ab32084, dilution 1:250, Abcam, Cambridge, UK), anti-nephrin (NMP1-30130Y17-R, dilution 1:200, Novus Biologicals Centennial, CO, USA), anti-ROCK1 (Cat# 202694T02, dilution 1:200, Sino Biological, Wayne, PA, USA), anti-ROCK2 (Cat# HPA044109, dilution 1:30, Sigma Aldrich, Milan, Italy). Staining with Alexa Fluor 546 phalloidin (Cat# A22283, dilution 1:100, Life Technologies, Monza, Italy) was performed following manufacturer’s instructions. Double immunolabelling was performed as described [13 (link)] and Alexa-Fluor secondary antibodies were from Molecular Probes (Life Technologies). Nuclei were counterstained with DAPI (Life Technologies) and excited with multiphoton laser at 800 nm.
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6

Quantification of Phosphorylated Myosin Light Chain

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Cells were seeded on top of a collagen I matrix and immunostained as described12 (link). Cells were fixed with 4% formaldehyde, permeabilised with 0.3% Triton X-100, blocked with 5% bovine serum albumin (BSA), and stained with primary antibody pSer19-MLC2 (1:200, #3671, Cell Signalling), which was detected with secondary Alexa Fluor 488 or 647 antibodies (Life Technologies). F-actin was stained using Alexa Fluor 546-phalloidin (Life Technologies) and nuclei with Hoechst 33258 (Life Technologies). Antibodies were diluted in 5% BSA-PBS. Imaging was carried out on Zeiss LSM 510 Meta confocal microscope with Plan-Apochromat 40x/1.2 NA (water) objective lenses and Zeiss LSM 710 confocal microscope with Plan-Apochromat 40x/1.3 Oil or a Plan-Apochromat 63x/1.4 NA (oil) objective lenses (Carl Zeiss) and Zen software. Images were analysed using ImageJ. p-MLC2 fluorescence signal was quantified calculating the pixel intensity in single cells relative to the cell area.
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7

Immunostaining of Occludin in Mouse Colon

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Distal colons were flushed with PBS, embedded in Tissue-Tek O.C.T. compound (SAKURA Finetechnical Company, Ltd., Tokyo, Japan) in cryomolds and snap frozen in liquid nitrogen for cryosectioning. Cryosections were prepared on a Leica Cryostat (Leica Microsystems, Wetzlar, Germany) at −21° C in 5μm thickness. Sections were mounted on glass slides, fixed in 100% ethanol at 4° C for 30 minutes followed by 3 minute of −20° C acetone fixation at room temperature. The slides were washed in PBS and blocked in FBS and rabbit serum. The tissue sections were stained with a monoclonal occludin antibody OC-3F10 (Life Technologies) at 4° C overnight. After washing in PBS, the sections were stained with a rabbit anti-mouse IgG Alexa Fluor 488 conjugated secondary antibody (Life Technologies) and Alexa Fluor 546 Phalloidin (Life Technologies) for 60 minutes at room temperature. The tissue sections were treated with ProLong Mountant with DAPI (Life Technologies) and covered with a coverslip. Fluorescence was visualized on the EVOS FL Cell Imaging System (Life Technologies) at 40X magnification.
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8

Visualizing Dendritic Morphology

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The following primary antibodies were used: chicken polyclonal anti-MAP2 (Abcam) to mark dendritic segments with anti-chicken 405nm fluorescent DyLight (Jackson ImmunoResearch Laboratories, West Grove, PA, USA). Alexa Fluor 546 phalloidin (Life Technologies, Thermo Fisher Scientific) was used to demarcate actin enriched dendritic spines and the contour of neuronal morphology.
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9

Antibody Use in Cellular Assays

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The following antibodies were used: previously described 8F3 anti-FANCC [15] (link), a gift from Dr. M. Hoatlin (OHSU), and Novus Biologicals (Littleton, CO); anti-FANCA (Santa Cruz Biotechnologies, Santa Cruz, CA), anti-UNC5A (Sigma-Aldrich, St. Louis, MO); anti-HA (12CA5, Roche Diagnostics, Indianapolis, IN); anti-cMyc (9E10, Santa Cruz Biotechnologies, Santa Cruz, CA); anti-GFP (clone B2; Santa Cruz Biotechnologies); anti-cleaved-caspase-3 (Cell Signaling Technologies, Danvers, MA), anti-mouse and anti-rabbit (Santa Cruz Biotechnologies); and donkey anti-rabbit Alexa Fluor 488 or 555 and anti-mouse Alexa Fluor 555 or 488 (Invitrogen, Burlington, ON). F-actin was labeled with Alexa Fluor 546 phalloidin (Life Technologies, Burlington, ON).
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10

Immunostaining of Caspase-3, Fibronectin, and Ey-globin

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Fish samples were fixed in 4% paraformaldehyde/phosphate-buffered saline (PBS) at 4°C overnight. Fixed samples were permeabilized using 0.5% TritonX-100/PBS at room temperature for 30 min, and then treated with Blocking-One solution (Nacalai Tesque) at room temperature for 1 h. Anti-activated-caspase3 (rabbit, Sigma-Aldrich), anti-fibronectin (rabbit, Sigma-Aldrich), and anti-εy-globin (rabbit, a gift from Dr. T. Atsumi, RIKEN; Wako-city, Japan) were used as the primary antibodies26 (link). Each antibody was used in 1:500 dilution with Blocking-One solution. Samples were reacted with primary antibodies at 4°C overnight. An Alexa-488 secondary antibody (Life Technologies) was used at 1:500 dilution in 0.1% Tween-20/PBS with Alexa Fluor® 546 Phalloidin (Life Technologies) and DAPI (Sigma-Aldrich). Samples were treated in the secondary antibody solution at 4°C overnight. Microscopic observation was performed using Leica MZ16FA, Leica TCS SP5, and Leica TCS SP8 microscopes (Leica Microsystems).
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