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225 protocols using rhod 2 am

1

Calcium Imaging in HEK293 Cells

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shLuciferase/shBZW2 lentivirus transduced and pCDH/tag-freeBZW2 transfected HEK293 cells were seeded (∼2.5 × 105 cells for Rhod-2AM, ∼1.0 × 105 cells for Mito4x-GCaMP6f) into 35 mm glass bottom dishes (MatTek) and allowed to adhere overnight. For Mito4x-GCaMP6f samples, cells were transfected with 1.5 μg Mito4x-GCaMP6f and allowed to incubate overnight. For Rhod-2AM samples, cells were washed once with 1x PBS and treated with Hanks Balanced Salt Solution containing 1 μM Rhod-2AM (Invitrogen) or 1 μM Rhod-2AM reduced with NaBH4 (Rhod-2AMr) and incubated in 37 °C for 30 min. The solution was then replaced with live cell imaging media (Invitrogen) and incubated for 15 min in 37 °C until imaged under 40x magnification using a Zeiss LSM710 inverted confocal microscope. After initial fluorescence intensities were captured for a subset of cells, 5 μM of ionomycin was added to fully saturate fluorescence signal. Maximum fluorescence intensities were then captured for the same cells.
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2

Preparation of Calcium and Voltage Dye Solutions

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Calcium indicator Rhod-2 AM (Invitrogen, Carlsbad, CA, USA) was dissolved in dimethyl sulfoxide (DMSO, Sigma-Aldrich, St. Louis, MO, USA) to prepare a stock concentration of 10 mg/ml (8.9 mM). The voltage indicator stock was prepared by dissolving Di-4-ANBDQPQ (University of Connecticut Health Center) in ethanol to obtain a stock concentration of 29 mM. To avoid repeated freezing and thawing, both stocks were stored in 50 μl aliquots at −20°C. For working concentrations of Rhod-2 AM dye loading solution, 15 μl Rhod-2 AM stock solution was mixed with 15 μl Pluronic F-127 (20% solution in DMSO, Invitrogen, Carlsbad, CA, USA) and then dissolved in 15 ml PSS (10 μM final concentration). Similarly, 5.2 μl of Di-4-ANBDQPQ stock was mixed with 15 μl Pluronic F-127 and then dissolved in 15 ml PSS to form a working concentration of Di-4-ANBDQPQ dye loading solution (10 μM final concentration). The working dye loading solutions were prepared on the day of the experiment.
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3

In vivo Characterization of Motor Neurons

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For in vivo characterization of MNs in parga mn2Et larvae, a 0.25% Rhod-2 AM (Life Technologies, Grand Island, NY) stock was made by dissolving 50 µg of dye in 20 µL Pluronic F-127:DMSO (1:4; Life Technologies, Grand Island, NY).
Next, the skin was removed from the midbody region and a 1:50 dilution of the Rhod-2 AM stock was bath applied to the exposed muscles to permit sequestration of indicator dye by MNs via the peripheral motor axons. Sensory neurons were not strongly loaded by this procedure. Following one-hour incubation, the Rhod-2 AM solution was thoroughly washed-out using zebrafish ringers solution. Confocal images were collected and cells were quantified as described for whole-mount immunohistochemistry (above).
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4

Calcium Imaging of Mitochondrial Dynamics

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For calcium imaging in primary neural cells, ~50 third instar Tg larval brains expressing Mito-GFP, Mito-GFP+UAS-dMiro-WT, Mito-GFP+UAS-dMiro-S66A, or Mito-GFP+dMiro RNAi driven by elav-GAL4 were collected. Primary neural cells were prepared according to published procedures (Egger et al., 2013 ). To monitor mitochondrial or cytosolic Ca2+ levels, primary neural cells were loaded with 1 μM Rhod-2 AM or Fluo-3 AM (Molecular Probes), respectively, in physiological salt solution [pH7.4] (150 mM NaCl, 4 mM KCl, 1 mM MgCl2, 5.6 mM glucose, 5 mM HEPES) for 30 min at 37 °C. Primary neural cells were treated with 1 μM Thapsigargin (Calbiochem) for intracellular Ca2+ perturbation. Calcium imaging was carried out using an inverted confocal microscope (LSM 510 META and LIVE 5, Carl Zeiss) with a 40× objective.
For measuring mitochondrial Ca2+ in mammalian cells, HeLa cells were transfected with control pCDNA3.0 vector or Myc-hMiro1, Myc-hMiro2, Myc-dMiro-WT, Myc-dMiro-S66E, or Myc-dMiro-S66A plasmids cloned in pCDNA3.0. After transfection, HeLa cells were loaded with Rhod-2 AM (10 μM in DMEM media, Molecular Probe) for 30 min at room temperature. Cells were then washed with DMEM for 30 min. Single cell fluorescence was excited at 545 nm and images of the emitted fluorescence obtained on a Leica TCS SP5 AOBS confocal microscope were processed with LAS AF (Leica).
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5

Mitochondrial Calcium Imaging in HUVECs

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Ca2+ imaging experiments to measure mitochondrial Ca2+ were performed as we previously described described44 (link), 45 (link). Human umbilical vascular endothelial cells (HUVECs, passages 3–7) were plated in glass-bottom dishes using the “Ca2+ imaging solution”, which consists of: 138 mM NaCl, 5.3 mM KCl, 1.2 mM NaH2PO4, 1.2 mM MgCl2, and 20 mM HEPES (pH 7.38, adjusted with NaOH); to this solution we added 5 mM EGTA, 1.8 mM CaCl2, 5 or 30 mM glucose, according to the experimental settings. Cells were loaded with Rhod-2 AM (3 μM, Thermo Fisher Scientific, Waltham, MA; catolog number: R1244) at 37 °C for 30 min, followed by washout and 1 h rest at room temperature for de-esterification: indeed, since Rhod-2 AM has a delocalized positive charge, it preferentially accumulates within the mitochondrial matrix, where it is hydrolyzed and trapped. Fluorescence was detected using a pass-band filter of 545–625 nm in response to excitation at 542 nm.
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6

Mapping Calcium Transients and Action Potentials

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Calcium transients were mapped using Rhod-2AM (Thermo Fisher, #R1245MP, Waltham, MA, USA) dye while action potentials were mapped using RH-237 dye. Rhod-2AM (Thermo Fisher, #S1109, Waltham, MA, USA) dye was reconstituted in DMSO to make 1 mg/mL of stock solutions. The stock solution was diluted in Pluronic acid (Gibco, #24040032, Billings, MT, USA) in a 1:1 ratio. The diluted dye was then added to dye-free Tyrode’s solution to obtain a 10 mM solution. Similarly, RH-237 dye was dissolved in DMSO to make 1 mg/mL stock solutions. The dissolved dye was added to Tyrode’s solution at a concentration of 5 mM. For mapping of calcium transients, cells were washed 3 times with warm Tyrode’s solution followed by incubation with the diluted dye (10 mM) for 15 min at 37 °C. Cells were washed 3 times with Tyrode’s solution and then mapped immediately. For mapping of membrane voltage, cells were washed 3 times with dye-free Tyrode’s solution, followed by incubation with 5 mM of RH237 dye for 5 min at 37 °C. Finally, cells were washed 3 times with Tyrode’s solution and mapped immediately. Calcium or voltage signals were mapped using MiCAM03 N256 Single Camera System (Scimedia Ltd., Costa Mesa, CA, USA) and analyzed using BV Workbench (Version 2.7.2, Scimedia Ltd., Costa Mesa, CA, USA).
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7

Intracellular Ca2+ Dynamics in H/R Kidney Cells

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Cells at a final concentration of 1 × 105 cells/mL were seeded into 6-well plates and subjected to H/R intervention. Fresh kidney tissues were ground, and pre-cooled PBS washed 2 times. Single-cell suspension of 1 × 105 cells/mL was prepared. For detection of intracellular Ca2+ concentration, 4 μL Fluo-3 AM (Solarbio, Beijing, China) was added to H/R NRK-52E cells and kidney single-cell suspension, and the Fluo-3 AM final concentration was 5 μM. For detection of mitochondrial Ca2+ concentration, 4 μL Rhod-2 AM (Thermo Scientific, MA, USA) was added to H/R NRK-52E cells and kidney single-cell suspension, and the Rhod-2 AM final concentration was 5 μM. For detection Ca2+ concentration in ER, 4 μL Mag-Fluo-4 AM (Thermo Scientific) was added to H/R NRK-52E cells, and the Mag-Fluo-4 AM final concentration was 5 μM. Cells were incubated at 37 °C for 30 min and washed twice with PBS. The incubation was continued by adding 2 mL PBS into the incubator at 37 °C for 30 min. Samples were collected, and 500 μL PBS was added to resuspend the cells for fluorescence intensity detection at excitation wavelength of 500 nm and emission wavelength of 525 nm using flow cytometry.
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8

Multiparametric Live-cell Imaging Assay

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Stained cells were washed twice with PBS and imaged on a SpectraMax i5 Multi-Mode plate reader. Experiments were carried out with 50k or 100k cells per well in 500 μL of media in 24 well format with or without fibronectin coated PA-gels (indicated). 2 μM Rhod-2 AM (Thermo, R1244) and 2 μM Calcium green-1 AM (Life Technologies, C3011MP) was added to culture media and allowed to stain at 22 °C for 20 min prior to imaging (frozen Rhod-2 AM aliquots were used only when the DMSO suspension remained clear), or 2 μM H2DCFDA (Thermo, D399) was added to media 1 or 4 h prior to imaging, 5 μM MitoPy1 (Tocris, 4428), or 1 μM Fura-2 AM (ab120873), or 2 nM TMRE (Fischer, T669) was applied to cells in media without disturbing the existing culture media (similar dilution scheme to MitoTracker) for 1 h prior to microscopy or plate reader assay.
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9

Quantifying Cellular Calcium and Oxidative Stress

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Stained cells were washed twice with PBS and imaged on a SpectraMax i5 Multi-Mode plate reader. Experiments were carried out with 50k or 100k cells per well in 500 µL of media in 24 well format with or without fibronectin coated PA-gels (indicated). 2 µM Rhod-2 AM (Thermo, R1244) and 2 µM Calcium green-1 AM (Life Technologies, C3011MP) was added to culture media and allowed to stain at 22 ºC for 20 min prior to imaging (frozen Rhod-2 AM aliquots were used only when the DMSO suspension remained clear), or 2 µM H 2 DCFDA (Thermo, D399) was added to media 1 or 4 h prior to imaging, or 5 µM MitoPy1 (Tocris, 4428) was added to media 1 h prior to imaging, 2 nM TMRE (Fischer, T669) was applied to cells in media without disturbing the existing culture media (similar dilution scheme to MitoTracker) for 1 h prior to microscopy or plate reader assay.
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10

Quantifying Calcium Signaling in ESCCs

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Isolated and cultured day 5 MNCs from ERp44‐deficient and WT neonatal pups and different stage ESCCs were treated with or without different pharmacological stimulators, and then Ca2+ transients were measured utilizing the Ca2+ indicator, Fura‐2AM (Molecular Probes), as previously described.22 (link) Briefly, cells were incubated for 30 minutes with 1 μmol/L of Fura‐2AM and then cells were washed with DMEM/F12 culture medium. Image capture and processing were carried out with a Ca2+ imaging system (Olympus, Tokyo, Japan). Ca2+ release amplitude was measured by normalized basal fluorescence to peak fluorescence intensity (FI). Rhod‐2AM (Invitrogen) was also used to visualize mitochondrial Ca2+ according to protocols resulting in the reduction of the ester by sodium borohydride that directs Rhod‐2 fluorescence to the mitochondria.23 (link) Briefly, cells were incubated for 60 minutes with 5 μmol/L of Rhod‐2AM culture medium and then cells were washed with culture medium. Total fluorescence was measured at a 581‐nm wavelength with a PerkinElmer plate reader.
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