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143 protocols using genios pro

1

Fluorescence Polarization Kinetics

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Kinetic measurements were performed on a TECAN Spark Cyto and on a TECAN GENios Pro plate reader by means of fluorescence polarization. Stocks of SNAPf (400 nm) and substrates (100 nm) were prepared in activity buffer (containing in mM: NaCl 50, HEPES 50, pH 7.3) with additional 10 μg mL−1 BSA. SNAPf and substrates were mixed (100 μL each) in a Greiner black flat bottom 96 well plate. Mixing was performed via a built-in injector on a TECAN GENios Pro or by manual pipetting on a TECAN Spark Cyto for TMR and SiR substrates, respectively. Fluorescence polarization reading was started immediately (TMR: λEx = 535 ± 25 nm; λEm = 590 ± 35 nm; 10 flashes; 40 μs integration time; SiR: λEx = 605 ± 20 nm; λEm = 670 ± 20 nm; 10 flashes; 40 μs integration time). Experiments were run in five repetitions and raw polarization values were one-phase decay fitted in GraphPad Prism 8.
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2

Bioluminescent Luciferase Assay Protocol

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Purified luciferase and commercially prepared Fre were combined to form the coupled reaction complex as follows: Reactions were typically carried out in a final volume of 100μl containing purified luciferase (typically in the range 1.5-15μgml−1), NADPH (200μM), FMN (tested over the range 10nM-100μM in this study), Fre (0.2 units ml−1) and decanal (0.02%) in 50mM potassium phosphate buffer, pH 7.0. Reactions were carried out at 22°C and monitored in either a Biospacelab Photon Imager or Tecan Genios Pro multimode microplate reader. The kinetic assays were carried out using a Tecan Genios Pro fitted with injector capacity as follows; all components other than decanal were combined in a final volume of 50μl per well in flat bottomed microtiter plates suitable for bioluminescence measurements. The reactions were initiated by injection of a further 50μl phosphate buffer containing 0.04% decanal. Reactions were monitored for 1100 milliseconds. All measurements were performed in triplicate.
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3

Intracellular Metabolite Quantification

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Samples for internal metabolite analysis were obtained by rapid sampling 83 (link). 1.2 mL of culture broth was rapidly quenched into 5 mL of 100% methanol, pre-cooled to -40°C. Samples were washed with cold methanol and extracted with boiling ethanol. Intracellular AMP and ADP were determined enzymatically, using a previously described assay based on myokinase, pyruvate kinase and lactate dehydrogenase reactions 86 . Assays were performed in white, flat bottom 96-well microtiter plates (Corning Inc., USA). NADH fluorescence was measured in a TECAN GENios Pro microtiterplate reader (Tecan, Männedorf, Switzerland) as previously described 83 (link). Intracellular ATP was also assessed enzymatically. The assay contained 115 mM triethanolamine (pH 7.6), 11.5 mM MgSO4x7H2O, 1.15 mM NADP+ per well including sample extract, total volume was 205 µL per well. The reaction to measure ATP was initiated by adding 12 mM glucose and 30 U hexokinase (Sigma-Aldrich Chemie B.V, Zwijndrecht, The Netherlands). Assays were performed in black, flat bottom 96-well microtiter plates (Corning Inc., USA). NADPH fluorescence was measured in a TECAN GENios Pro microtiterplate reader. The adenylate energy charge was calculated according to the previously described 42 (link) equation:
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4

Quantifying Intracellular Lipid Accumulation

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Intracellular lipid accumulation was determined enzymatically using the serum triglyceride determination kit (Sigma-Aldrich, St. Louis, MO, USA). Therefore, spheroid-laden hydrogels were harvested in 0.5% aqueous Thesit solution (0.5% Thesit in H2O; Gepepharm, Hennef, Germany) and homogenized with a TissueLyser II (Qiagen, Hilden, Germany) at 25 Hz for 5 min, followed by sonification (Sonopuls; Bandelin electronic, Berlin, Germany). Subsequently, quantification of triglyceride content was carried out according to the manufacturer’s instructions and measured with a spectrofluorometer (Tecan GENios pro; Tecan, Crailsheim, Germany) at 570 nm. Results were normalized to the total amount of DNA in the respective hydrogel lysates. For quantification of the DNA content, hydrogels were harvested in phosphate/saline buffer (50 mM phosphate buffer, 2 mM Na2EDTA * 2 H2O, 2 M NaCl, pH 7.4; all obtained from Carl Roth, Karlsruhe, Germany) and homogenized as described above. Using the intercalating dye Hoechst 33258 (Polysciences, Warrington, USA), DNA content was determined fluorometrically (Tecan GENios pro; Tecan, Crailsheim, Germany) at an excitation wavelength of 365 nm and an emission wavelength of 458 nm. Salmon sperm DNA served as a standard.
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5

Quantifying Intracellular Lipids in Differentiated ASCs

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Accumulation of intracellular lipids in differentiated ASCs was assessed as described in [28 (link)]. In brief, an analysis of triglyceride content was carried out using the triglyceride determination kit (Sigma-Aldrich). Cells were harvested in 0.5% aqueous Thesit solution (0.5% Thesit in H2O; Gepepharm, Hennef, Germany) and subsequently sonicated (Sonopuls; Bandelin electronic, Berlin, Germany). Triglyceride content was quantified according to the manufacturer’s instructions with a spectrofluorometer (Tecan GENios pro; Tecan, Crailsheim, Germany) at 570 nm. To quantify the DNA content of the samples, cells were suspended in phosphate/saline buffer (50 mM phosphate buffer, 2 mM Na2EDTA × 2 H2O, 2 M NaCl, pH 7.4; all purchased from Carl Roth, Karlsruhe, Germany) and sonicated. DNA-intercalating dye Hoechst 33258 (Polysciences, Warrington, PA, USA) was used to determine DNA content fluorometrically (Tecan GENios pro; Tecan) at an excitation wavelength of 365 nm and an emission wavelength of 458 nm. Salmon sperm DNA served as a standard. Intracellular TG contents were normalized to the total amount of DNA in the corresponding sample.
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6

Oxidative Stress Measurement Assay

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Cells were stimulated with either GL or tert-butyl hydroperoxide (TBHP) (0.4 mM). After 3 h of incubation, cells were washed with PBS and incubated with 1 μM of 2,7-dichlorofluorescein diacetate (H2DCF-DA; Molecular Probes, OR, USA) for 20 min at 37°C in darkness. Fluorescence was measured at 450 nm excitation and 535 nm emission using a TECAN GENios Pro (Tecan Group Ltd, Switzerland).
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7

Intracellular ROS Measurement in Cells

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Intracellular ROS production was detected using a ROS assay kit (Beyotime Institute of Biotechnology). Cells were treated as described above. In addition, after cells were treated with HG + 30 mM dioscin for 24 h, the culture medium was changed to one containing only 30 mM HG and then cultured for another 24 h (HG + Dioscin + HG group). The DCs were incubated at 37°C with 10 µmol/l 2,7′-dichlorodihydrofluorescein diacetate (DCFH-DA) for 20 min and mixed once every 3–5 min. Then, the cells were washed 3 times using cell culture medium without serum to remove the DCFH-DA that had not entered the cells. Fluorescence intensity was measured at an excitation wavelength of 488 nm and an emission wavelength of 525 nm by a TECAN GENios Pro multifunction microplate reader (Tecan Group, Ltd.). The amount of oxygen radicals in each group was expressed as the fluorescence intensity with respect to the control group.
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8

Mitochondrial ROS Generation Assay

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As in the most of similar studies, the rate of ROS generation in mitochondria was estimated in state 2. Therefore, the rate of ROS generation was determined in state 2 using the incubation medium (IM) without creatine by a previously described method [33 (link)]. The rate of ROS generation was evaluated by an accumulated ROS amount after 30 min incubation at different temperatures ranging from 37 to 45 °C. After the incubation of 0.5 mg mitochondrial protein/mL with P+M or G+M, 5 μM Amplex Red (N-acetyl-3,7-dihydroxyphenoxazine) and 10 U/mL horseradish peroxidase, ROS amount was determined fluorimetrically using a thermostated fluorimeter “Tecan GENios Pro™” (Tecan Group Ltd., Menedorf, Switzerland). Measurements were carried out in 96-well plates at 535/590 ± 10 nm excitation/emission wavelengths. Calibration was performed by adding 5 μmol H2O2.
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9

Evaluating GEM and OA Effects on SMMC-7721 Cells

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To determine the effect of GEM or OA on SMMC-7721 cell viability, the cells were treated with GEM at different concentrations (0, 50, 100 and 200 µM) for 24 and 48 h at 37°C. Following this, 1×106 cells in 96-well plates were treated with OA at different concentrations (0, 0.5, 1, 1.5 and 2 mM) with 10% BSA overnight at 37°C, respectively. Cell viability was determined using Cell Counting kit-8 dye (Beyotime Institute of Biotechnology, Beijing, China), according to manufacturer's instructions. Absorbance was measured at 450 nm with a GENios multifunction-reader (Tecan GENios Pro; Tecan Group, Ltd., Männedorf, Switzerland).
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10

Antifungal Activity of Plant Extracts

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Three different colonies from the agar medium were grown in SDB. The cell concentrations were standardised using 0.5 M MacFarland solution to 2 × 108 c.f.u/ml according to protocol by Ramirez-Arcos [19 (link)]. The broth microdilution assay was conducted to determine the effect of the two crude extracts and pure tormentic acid on both C. albicans and C. tropicalis according to Wiegand et al. [20 (link)]. Double dilution concentrations of 0 μg/ml to 100 μg/ml of the extract and tormentic acid were prepared in SDB. Fluconazole or miconazole was used as the positive control. Wells containing either the extract only or SDB only served as controls. The 3-(4,5-dimethythiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) assay was done to investigate the presence/absence of viable cells in all wells after incubation according to [21 ]. A volume of 20 μl of the MTT solution was added to each of the 96 wells on the microtitre plates. The plates were incubated at 37°C for at least 2 hours. Color changes were quantified at 590 nm using a microplate reader (Genios Pro, Tecan Group Ltd., Grödig, Austria). The Minimum inhibitory concentrations (MIC) for the extract or tormentic acid were recorded. Graphs were plotted to show cell viability using GraphPad Prism6 (Version 6.0 GraphPad Software Inc., San Diego, California, USA).
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