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M6a rna methylation quantification kit

Manufactured by Epigentek
Sourced in United States

The M6A RNA methylation quantification kit is a laboratory tool designed to measure the level of N6-methyladenosine (m6A) modification in RNA samples. The kit provides a convenient and efficient method for quantifying m6A levels, which is a prevalent epigenetic modification involved in various biological processes.

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38 protocols using m6a rna methylation quantification kit

1

m6A Quantification and Immunoprecipitation

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Total m6A content was measured in 200 ng aliquots of total RNA extracted from TCam‐2 and TCam‐2/CDDP using an m6A RNA methylation quantification kit (Epigentek, NY, USA) according to the manufacturer's instructions. To measure the m6A+ TFAP2C mRNA levels, m6A immunoprecipitation was performed (see below). A 1‐µg aliquot of the m6A antibody was conjugated to protein A‐agarose slurry overnight at 4°C. A 100 μg aliquot of total RNA was incubated with the antibody in immunoprecipitation buffer supplemented with RNase inhibitor for 3 hours at 4°C. RNA was eluted from the beads by incubation in 300 μL of elution with 4.2 μL of proteinase K for 1.5 hours at 50°C, and m6A+ RNA was purified by phenol/chloroform extraction and analysed by qPCR. For primers, annealing temp and cycles, see above.
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2

m6A RNA Methylation Quantification in Cultured Cells

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RNA in cultured cells was extracted with total RNA purification kit (TR01, Genemark, China), and treated with DNase I to remove DNA contaminations. Purified RNA (200 ng per reaction) was assessed with m6A RNA methylation quantification kit (P‐9008, Epigentek, Farmingdale, NY). A negative and a positive control were provided along with the kit. Adjusted m6A levels were calculated following the provider's instructions.
After reverse transcription, quantitative PCR assay was performed using SYBR Green (Applied Biosystems, Foster City, CA) method. The setting for amplification was 95°C/30 s, followed by 40 cycles of 95°C/30 s, 59°C/20 s, and 72°C/30 s. Primers were generated by Sangon Biotechnology (Shanghai, China). Primer sequences were:
IFNA, 5′‐ATTTCTGCTCTGACAACCTC‐3′, 5′‐CTGAATGACTTGGAAGCCTG‐3′
IFNB, 5′‐ACTGCAACCTTTCGAAGCCT‐3′, 5′‐AGCCTCCCATTCAATTGCCA‐3′
IFNG, 5′‐TGCAGGTCATTCAGATGTAGCGGA‐3, 5′‐TGTCTTCCTTGATGGTCTCCACACTC‐3′
ISG15, 5′‐TTTGCCAGTACAGGAGCTTG‐3′, 5′‐TTCAGCTCTGACACCGACAT‐3′
GAPDH, 5′‐TGGTATCGTGGAAGGACTCA‐3′, 5′‐CCAGTAGAGGCAGGGATGAT‐3′
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3

Quantifying RNA Methylation Using m6A Kit

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Overall methylation m6A content was measured by using m6A RNA Methylation Quantification Kit (Epigentek, Cat# P-9005-48) according to manufacturer’s instruction. Briefly, 200ng total RNA was inputted in per reaction following the detection antibody solution was added into per reaction respectively. The m6A level was quantified by colorimetry, and the absorbance of each reaction was measured at 450 nm.
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4

Quantifying Global RNA Methylation Levels

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The global RNA methylation levels of 6-methyladenosine were quantified by the m6A RNA methylation quantification kit (Epigentek, Farmingdale, NY, USA). Two hundred nanograms RNAs were coated on per assay well, and the m6A content was captured and detected according to the manufacturer’s instructions.
Shortly, the methylated fraction of total RNA, through ELISA-like reactions, was recognized by the m6A antibody and quantified in a microplate spectrophotometer by reading the absorbance at 450 nm.
In each experiment, the percentage of m6A was calculated using the second-order regression equation of a standard curve that was constructed by mixing equivalent molar concentrations at different ratios of full unmethylated and methylated control DNA. Each sample was analyzed in triplicate.
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5

LPS-Induced m6A RNA Methylation Quantification

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The cells were cultured in six‐well culture dishes until they reached approximately 80% confluence and were then treated with 1 μg/ml Porphyromonas gingivalis LPS (InvivoGen, San Diego, CA, USA) for 3, 6, 12 and 24 hrs. Cells without LPS stimulation were used as controls.
Total RNA was extracted, and total m6A content was determined using an m6A RNA methylation quantification kit (EpiGentek, Farmingdale, NY, USA) according to the manufacturer's instructions.
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6

Quantifying m6A RNA Methylation

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Total RNA was isolated using TRIzol reagent (Cwbiotech). The m6A level was measured using an m6A RNA methylation quantification kit (EpiGentek), according to the manufacturer’s instructions.
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7

Quantification of m6A RNA Methylation

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Total RNA from patient samples was isolated using Invitrogen TRIzol (Thermo Fisher Scientific, Waltham, MA, USA), according to the manufacturer’s instructions, and treated with deoxyribonuclease I (Sigma-Aldrich; Merck KGaA, USA). RNA quality was analyzed using NanoDrop technology (Thermo Fisher Scientific, USA). The m6A RNA methylation quantification kit (Epigentek, USA) was used to measure the m6A content in the total RNAs. Briefly, 200 ng RNAs were coated on assay wells. Capture antibody solution and detection antibody solution were then added to assay wells separately, following the manufacturer’s instructions. The m6A levels were quantified colorimetrically by reading the absorbance of each well at a wavelength of 450 nm, and then calculations were performed based on the standard curve.
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8

Quantifying m6A RNA Modification

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Total m6A modification level was measured in 200 ng RNA extracted from RA-FLSs transfected with METTL3/14 siRNA. M6A levels of total RNA were measured using an m6A RNA methylation quantification kit (P-9005, EpiGentek, USA) according to the manufacturer’s instructions.
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9

Quantification of m6A Modifications in Pterygium

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Total RNA from 18 pairs of pterygium and normal conjunctiva tissues from discovery phase was used for quantification of m6A modifications using an m6A RNA Methylation Quantification Kit (P-9005, EpiGentek). First, we prepared a negative control and also a positive control using six different concentrations of m6A ranging from 0.01 to 0.5 ng/μL, as recommended by the manufacturer. Then 2 μL positive control, 2 μL negative control, or 200 ng total RNA were bound in the 96-well plates. After removing the binding solution from each well, the samples were washed three times. The wells were incubated for 1 h with the addition of anti-m6a antibody and washed four times. Then, add the detection antibody to the wells, incubate at room temperature for 30 min and wash four times. Add the enhancer solution, incubate at room temperature for 30 min and then wash five times. Finally, add the developer solution and incubate at room temperature until the developer solution turns blue and then add the stop solution, the samples were analyzed on a SYNERGY 2 (BioTek) microplate reader at 450 nm; the absolute amount of m6A was quantified and the percentage of m6A in RNA was established as%m6A in total RNA.
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10

Quantification of m6A in RNA

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The m6A levels in the total RNA were detected using a commercial m6A RNA methylation quantification kit (#P9005, Epigentek, NY, USA). Briefly, 250 ng of total RNA was added to each well, and capture antibody solution and detection antibody solution were added according to the manufacturer's protocol. The absorbance of each well at a wavelength of 450 nm was measured to determine the m6A level, and then calculations were performed based on the standard curve.
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