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122 protocols using discovery v8

1

Quantifying Atherosclerotic Lesion Metabolic Activity

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Regions of interest (ROIs) corresponding to the atherosclerotic lesion, the periaortic BAT and the lesion-free aortic wall were drawn on the digitized HES-stained sections (Discovery.V8, Zeiss). The histological relevance of the ROIs was assessed by means of comparison with an adjacent section immunostained for macrophages and BAT. Following semi-automated landmark-based coregistration, ROIs were used to quantify tracer activity on the autoradiographic image (Gimp 2.6.8 and ImageJ 1.46). The same process was used to quantify activity of reference tissues samples with known amounts of radioactivity, which allowed the conversion of intensity values into MBq.g−1. Tissue sections stained for macrophages were digitized (Discovery.V8, Zeiss) and used to assess macrophage infiltration in individual lesions through the evaluation of the F4/80 positive-to-total lesion area ratio (Gimp 2.6.8 and ImageJ 1.46).
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2

Detailed Protocol for Dissection and Illustration

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Dissecting and pencil drawings were done under a Zeiss Discovery V8 with a camera lucida. Illustrations were produced by hand on paper, with a camera lucida mounted on a Zeiss Discovery V8. Drawings were afterwards scanned, and digitally touched up. All illustrations and pictures were edited in Adobe Photoshop CC. The backgrounds have been smoothed out, to reduce any disruptive visuals and to make them more similar in overall appearance. All terminology follows the recent literature (Wesener 2016a) .
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3

Standardized Insect Morphometric Measurements

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Measurements. Measurements were taken using a Zeiss Discovery V8 dissecting microscope with an ocular scale. All known specimens were measured. Measurements include: 1)

total length

(TL)
, 2)

greatest width across elytra

(GW)
, 3)

greatest width of pronotum

(PW)
, 4)

greatest width of head

(HW)
, 5)

distance between eyes

(EW)
, 6)

greatest length of metafemur

(FL)
, and 7)

greatest width of metafemur

(FW)
. The ratios TL/GW, HW/EW and FW/FL were also calculated.
Images. Illustrations were made using a drawing tube on a Zeiss Discovery V8 dissecting scope. Sketches were first done in pencil then scanned, placed into an Adobe Illustrator artboard and “inked” digitally using vector lines.
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4

Fracture Type Evaluation of Dental Specimens

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After specimens were tested, fracture type was evaluated with a stereomicroscope (1.5× magnifications) (Discovery V8, Zeiss, Oberkochen, Germany) and classified as adhesive fracture, cohesive fracture, and mixed fracture. A cohesive failure occurs when the fracture occurs completely within the dentin structure or within the restorative material; an adhesive failure occurs when the bond fails at the interface of the adhesive and the restorative material; and it is considered mixed when a combination of adhesive and cohesive fractures occurs [4 (link)].
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5

Dye Penetration Evaluation in Dentistry

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Dye penetration extent was evaluated with a stereomicroscope (1.0× magnifications) (Discovery V8, Zeiss, Germany) and scored between 0 and 3 for each side of every tooth. Score 0 was attributed to the absence of dye penetration; score 1 was attributed to stain at the interface; score 2 was attributed to stain across the interface < 1 mm; and score 3 was attributed to stain across the interface ≥ 1 mm. The highest score for each tooth was the one used (Figure 3).
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6

Hamster Model of Amoebic Keratitis

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Hamsters were nasally anesthetized with 4% sevoflurane in O2. The right eye was used as healthy control, and the left eye was used for induction of A. griffini keratitis, except for the sham group, who were inoculated with saline solution at 0.9% only. A total of 50,000 trophozoites in a volume of 5 μl resuspended in saline solution at 0.9% were inoculated into each cornea using a 34 G needle and a stereoscope (ZEISS Discovery.V8).
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7

Osteoclast Resorption Assay Protocol

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The functionality of the osteoclasts was analyzed by using two different resorption assays: Osteo-assay Plates (#3987, Corning, Corning, NY, USA) and ivory slices. The Osteo-assay Plates are coated with inorganic three-dimensional crystalline material (bone biomimetic synthetic surface). Ivory slices were cut with a low speed water-cooled diamond saw. The slices had a diameter of 7 mm and a thickness of 0.5 mm. Osteoclasts were generated from hPBMCs in monoulture and co-cultures with cementoblasts as described above. After 21 days of culture, the cells were lysed by 2.5% chlorinated soda solution for 5 min at room temperature and washed by distilled water. Ivory slices were stained with a solution of 1% toluidine blue (#89640, Sigma-Aldrich, St Louis, MO, USA) in 1% sodium borate (#S9640, Sigma-Aldrich, St Louis, MO, USA) for 4 min. Resorption pits were observed and quantified using photomicrographs from five randomly chosen fields by inverted phase-contrast microscopy for Osteo-assay Plates and stereomicroscopy Discovery V8 (Zeiss, Oberkochen, Germany) for the ivory slices.
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8

Embryo Size Measurement Imaging Protocol

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Embryos were imaged on a Zeiss Discovery V8 stereomicroscope with an AxioCam ICC 1 and AxioVision version 4.6 software. Measurements of conceptus size (length and width) were collected using ImageJ (version 1.48; National Institutes of Health).
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9

Whole-mount Oil Red O and H&E Staining

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Whole-mount Oil Red O stain was performed as described (Kim et al., 2015 (link)). For histologic analysis, larvae were fixed in 10% formalin and embedded in paraffin. 6 μm sections were stained with hematoxylin and eosin (H&E). Images were obtained on a Carl Zeiss Discovery V8 stereomicroscope using a Zeiss Axioncam MRc5 camera (Carl Zeiss, Jena, Germany).
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10

Measuring Regenerative Capacity in Fly Wings

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Wings of adult flies from heat shocked larvae were scored and measured after genotype blinding by another researcher. Scoring was performed on anesthetized adults by binning into a regeneration scoring category (Figure 1G; Harris et al. 2020 (link)). Wing measurements were performed by removing wings, mounting in Permount solution and imaging using a Zeiss Discovery.V8 microscope. Wing area was measured using the ImageJ software. Male and female adults were measured separately to account for sex differences in wing size using a reproducible measuring protocol that excludes the variable hinge region of the wing (details of measuring protocol available on request). Statistics were performed using GraphPad Prism 9.0.
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