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23 protocols using bio plex pro human cytokine 27 plex

1

Multiplex Cytokine Quantification in Sera

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Cytokine concentrations in patients sera were quantified by multiplex protein arrays, according to the manufacturer’s instruction (BioRad Laboratories, USA) as described [13 (link)]. In brief, a 2-laser array reader (Bio-Plex, BioRad Laboratories) simultaneously quantifies all cytokines of interest. Standard curves and concentrations were calculated with Bio-Plex Manager 4.1.1 on the basis of the 5-parameter logistic plot regression formula. Bio-Plex Pro Human Cytokine 27-Plex and Bio-Plex Pro Human Cytokine 27-Plex (BioRad Laboratories) were used to detect IL-1b, IL-1RA, IL-2, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IL-10, IL-12(p70), IL-13, IL-15, IL-17, Eotaxin, FGFb, G-CSF, GM-CSF, IFNg, IP-10, MCP-1, MIP-1a, PDGF, MIP-1b, RANTES, TNFa, VEGF, HGF.
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2

Biomarkers of IBS-related Stress Response

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Based on previous findings that IBS is related to stress and an intestinal inflammatory response [9 (link),14 (link),40 (link)], the following parameters were tested to investigate the mechanisms related to these reactions, at 0, 4, and 8 weeks: (1) Cortisol, (2) corticotropin-releasing hormone (CRH), (3) serotonin, and (4) cytokines, including eotaxin, FGF, G-CSF, GM-CSF, IFN-γ, IL-10, IL-12, IL-13, IL-15, IL-17, IL-1β, IL-1ra, IL-2, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IP-10, MCP-1, MIP-1, PDGF, RANTES, TNF-α, and VEGF [41 (link),42 (link)]. Enzyme-linked immunosorbent assay (ELISA) kits for cortisol and serotonin were purchased from LDN GmBH and Co. (Nordhorn, Germany), and a CRH ELISA kit was obtained from MyBioSource (San Diego, CA, USA). The levels of 27 cytokines were determined using the Bio-Plex Pro™ Human Cytokine 27-Plex (Bio-Rad Laboratories, Hercules, CA, USA).
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3

Cytokine Profiling of Conditioned Media

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Conditioned media were collected from every flask in this study (n = 3), centrifuged at 5000 ×g for 5 minutes, and stored at −80°C. Filtrates (50 μL) were analysed using both the Bio-Plex Pro-Human Cytokine 27-Plex and Bio-Plex Pro-Human Cytokine 21-Plex assay (Bio-Rad, USA), according to the manufacturer's instructions (see Supplementary Methods).
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4

Vitreous Cytokine Profiling by Multiplex Assay

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Before measuring 27 cytokines, vitreous samples were centrifuged 10,000g for 10 min to remove cellular components. Vitreous samples were measured using a Bio-Plex Pro Human Cytokine 27-plex (Bio-Rad Cat# M500KCAF0Y, RRID:AB_2893118, California, USA), which included the following 27 cytokines: interleukin (IL)-1β, IL-1 receptor antagonist (IL-1ra), IL-2, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IL-10, IL-12, IL-13, IL-15, IL-17, Eotaxin, basic fibroblast growth factor (b-FGF), granulocyte colony-stimulating factor (G-CSF), granulocyte-macrophage colony-stimulating factor (GM-CSF), interferon-γ (IFN-γ), interferon-inducible 10 kDa protein (IP-10), monocyte chemotactic protein 1 (MCP-1), macrophage inflammatory protein (MIP)-1α, MIP-1β, platelet-derived growth factor (PDGF), regulated upon activation, normal T cell expressed and secreted (RANTES), tumor necrosis factor alpha (TNF-α), and VEGF. The experimental procedure for the cytokine assay was in accordance with the instructions. When the measured values fell below the limit of detection, we set the recorded concentration at the limit of detection. A cytokine was excluded if more than 10% of the samples were below the detection limit.
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5

Cytokine Profiling of Conditioned Media

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Conditioned media collected from BEAS-2B and U937 cells were assayed for inflammatory cytokines and growth factors by Bioplex Pro human cytokine 27-plex (BioRad, M500KCAF0Y). After the specified post-exposure/treatment incubation period, collected conditioned media was assayed for cytokines with Bioplex 3D system. Only the detectable mediators were plotted and compared with the untreated control group.
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6

Multiplex Cytokine Profiling in Serum

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Serum cytokines were measured using a Bio-plex Pro human cytokine 27-plex and a customized human cytokine 9-plex assay kit purchased from Bio-Rad according to the manufacturer’s instructions.
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7

Cytokine Profiling of Bronchial Epithelial Cells

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To characterize the cytokine secretion profile of the BEM, culture media were collected before and after the ALI period. Briefly, at day 5 differentiation medium was added to the BEM and collected at day 7 (pre-ALI condition). Regarding the post-ALI condition, BEM was maintained for 21 days in differentiation medium. During the post-ALI the medium was changed at intervals of 2 days and the cytokine profile measured at day 28 from initial assembling of BEM. For cytokine profiling, collected medium from the basal side of the well was centrifuged at 9500 g and stored at -80°C. Thawed undiluted media from biological triplicates were tested by Bio-Plex Pro Human Cytokine 27-plex (Bio-Rad), according to the producer protocol. BEGM and Pneumacult-ALI reference wells were used as basal controls.
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8

Cytokine Profiling of Airway Cells

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Apical washings and basolateral supernatants from unstimulated and IL-13-stimulated PBECs and PNECs were analyzed using a 27-plex bead array assay (Bio-Plex Pro Human Cytokine 27-plex) (BioRad, UK) as per manufacturers' instructions. Results are only shown for analytes that were within the limits of detection (IL-1rα, IL-6, IL-7, IL-8, IL-12p70, granulocyte colony–stimulating factor (G-CSF), granulocyte macrophage colony-stimulating factor (GM-CSF), interferon gamma-induced protein 10 (IP-10), monocyte chemoattractant protein-1 (MCP-1), regulated upon activation, normal T cell expressed and secreted (RANTES) and vascular endothelial growth factor (VEGF).
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9

Cytokine Profiling of Immune Cells

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Phosphate-buffered saline, Roswell Park Memorial Institute 1640 (RPMI-1640) medium, penicillin–streptomycin 100×, IL-2, and LPS were purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). CD69 fluorescein isothiocyanate, CD56 phycoerythrin, CD3 peridinin chlorophyll protein, CD25 brilliant violet 421 and heparin Vacutainer vials were purchased from BD Biosciences (Franklin Lakes, NJ, USA). The Bio-Plex Pro™ human cytokine 27-Plex was purchased from Bio-Rad Laboratories Inc. (Hercules, CA, USA).
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10

Cytokine Profiling of Cell-Free Supernatants

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For the ADCC assay with patient material, cell-free supernatants were collected at endpoint (20 hours) and stored at -80°C. Samples were thawed and cytokine content analyzed by Luminex technology using Bio-Plex Pro Human Cytokine 27-plex and IL2RA single-plex assays (Bio-Rad, Hercules, CA, USA) according to the manufacturer’s instructions. Sample acquisition and cytokine concentrations were determined using a Bio-Plex 200 System (Bio-Rad) and its integrated software. Figures were generated with Spotfire v11 (TIBCO Software, Palo Alto, CA, USA) or Prism v8.4.2 (GraphPad Software).
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