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P nitrophenyl esters

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P-nitrophenyl esters are a class of organic compounds commonly used as versatile reagents in various laboratory applications. They serve as acyl donors in various chemical reactions and are often employed in the modification and conjugation of biomolecules, such as proteins and enzymes. These compounds exhibit characteristic yellow coloration and can be utilized as spectrophotometric indicators in a range of analytical procedures.

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9 protocols using p nitrophenyl esters

1

Lactofen Purity and Reagents

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Lactofen (99% purity) was purchased from Sigma-Aldrich Chemical Co. (Shanghai, China). All the p-nitrophenyl esters were purchased from Sigma. Methanol, n-hexane, and isopropanol were of pure chromatographic grade. All other chemicals used were of analytical grade.
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2

Esterase Activity of AtABH Enzyme

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The esterase activity of AtABH was determined by a spectrophotometric method using p-nitrophenyl esters of different chain lengths (Sigma-Aldrich) as substrates: p-nitrophenyl acetate (C2), p-nitrophenyl butyrate (C4), p-nitrophenyl caprylate (C8), p-nitrophenyl laurate (C12), p-nitrophenyl myristate (C14), and p-nitrophenyl palmitate (C16), as described previously (Esteban-Torres et al. 2013 ). Stock solutions (25 µM) of the p-nitrophenyl esters were prepared in acetonitrile-isopropanol (1/4, v/v).
The enzymatic reactions were done in 50 mM sodium phosphate buffer (pH 7.0) containing the substrate at 0.5 mM final concentration, and 30 µg of AtABH (3.8 µM). After 10 min of incubation at 37 °C, the reaction was stopped by chilling on ice, and the amount of p-nitrophenol released was determined as described before (Esteban-Torres et al. 2013 ). Enzyme assays were performed in triplicate.
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3

Enzymatic Immobilization on Mesoporous Silica

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All p-nitrophenyl esters were purchased from Sigma. Mesoporous silica SBA-15 (<150-μm particle size, 8-nm pore size) was purchased from Rusology Technology Co. LTD (Guangxi, China). The chitosan beads, Chitopearl BCW-3010 (BCW), were purchased from Wako Chemicals GmbH (Neuss, Germany). T4 DNA ligase, restriction endonuclease, and DNA polymerase were purchased from TaKaRa (Dalian, China) and used according to manufacturer recommendations. E.Z.N.A. Plasmid Mini Kit and E.Z.N.A. Gel Extraction Kit were purchased from OMEGA (Norcross, USA). All chemicals were of analytical or electrophoresis grade, and unless stated otherwise, they were purchased from Sigma Aldrich (St. Louis, MO, USA).
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4

Expression and Purification of Recombinant Protein

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The plasmid pET‐28a(+) was used to express the target gene in the expression host Escherichia coli BL21(DE3). Restriction endonucleases, DNA polymerase, and T4 DNA ligase were purchased from NEB (New England BioLabs, China). Nickel columns were purchased from GE (General Electric Company, China). p‐Nitrophenyl esters were obtained from Sigma (St. Louis, USA). All other chemicals were of analytical grade and purchased from Sangon (Shanghai, China).
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5

Peptide-Based Hydrogel Synthesis

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pNP phosphate and all the p-nitrophenyl esters were purchased from Sigma-Aldrich. 4-methylimidazole was purchased from Acros Organics. 1-Isopropoxy-4-nitrobenzene and p-nitrophenyl glycerol were obtained from TCI America and Alfa aesar, respectively. The peptides RADA16H, RADA16H2, RADA16H3 and RGDA16H2 were commercially synthesized form SciLight Biotechnology LLC and used without further purification.
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6

Cloning and Expression of YLLip2 Lipase

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Escherichia coli DH5α (Invitrogen, USA) competent cells were used for transformation and vector amplification. pMD18-T-flip2 (T-vectors harboring full-length YLLip2 gene), plasmid pJME803 (a kind gift from Jean-marc Nicaud, CNRS, Institut Micalis, Domaine de Vilvert, France), and pINA1297 (a kind gift from Catherine Madazak, INRA, UMR1319 Micalis, Domaine de Vilvert, Jouy-en-Josas, France) were stored in our laboratory. Strain Y. lipolytica JMY1212 (a kind gift from Jean-marc Nicaud, CNRS, Institut Micalis, Domaine de Vilvert, France) for protein expression was also stored in our lab. Plasmid extraction kit and DNA purification kit were purchased from Omega (USA). PrimeSTAR HS DNA polymerase, restriction endonucleases, and DNA Ligation Kit were purchased from Takara (Dalian, China). QuikChange Site-Directed Mutagenesis Kit was purchased from Agilent Technologies Inc. (CA, USA). p-Nitrophenyl esters were bought from Sigma-Aldrich (St. Louis, USA). All other reagents used were of analytical grade and commercially available from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China).
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7

Isolation and Characterization of Carboxylesterases

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P. synxantha PS1 was isolated from oil well-produced water (Shengli Oilfield, Shandong Province, China). E. coli DH5α (Invitrogen, USA) and plasmid pMD19-T (TaKaRa, Japan) were used for gene cloning and sequencing of AT-containing and AT-truncated carboxylesterases. Plasmid pET-28a (Novagen, USA) was used as a vector to construct the protein expression plasmid in E. coli BL21 (DE3). The substrates fenpropathrin, cypermethrin, fenvalerate, bifenthrin, and p-nitrophenyl esters were purchased from Sigma (St. Louis, MO, USA). All other chemicals were of analytical grade and purchased from local markets.
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8

Enzymatic Hydrolysis of p-Nitrophenyl Esters

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Esterase activity was determined by measuring the release of p-nitrophenol during the enzymatic hydrolysis of different p-nitrophenyl esters (Sigma-Aldrich). The release of p-nitrophenol was measured at 405 nm using an Ultrospec 2000 pro UV/visible spectrophotometer (Amersham Bioscience). In a total volume of 1.0 mL, esterase was incubated with 0.25 mM p-nitrophenyl butyrate (C4) as a substrate in 20 mM Tris-HCl buffer (pH 8.17) at 46.27°C for 30 min. One unit of enzyme activity was defined as the amount needed to release 1 μmol p-nitrophenol per min.
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9

Purification and Analysis of Proteins

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Isopropyl thio-β-D-galactoside (IPTG), p-Nitrophenyl esters, phenyl acetate, α-naphtyl acetate, β-naphtyl acetate, and 4-methyl umbelliferyl acetate were procured from SIGMA ALDRICH (USA). Ni-NTA resin for affinity chromatography was purchased from Qiagen, Germany. Standard proteins for size exclusion chromatography were purchased from Bio-Rad laboratories (USA). PCR primers were procured from Bio Serve, India. Other reagents and chemicals were procured from Himedia.
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