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14 protocols using anti gr

1

Cardiomyocyte Immunofluorescence Analysis

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Cells were fixed as described previously.31 Cells were stained using anti‐GR (3660S, Cell Signaling Technology, Danvers, MA) and antiactinin (A7732, Sigma, St. Louis, MO). Prolong gold (Invitrogen, Carlsbad, CA) used for mounting contains DAPI for nuclear staining. Image J32 was used for cell surface area measurements for isolated cardiomyocytes.
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2

Chromatin Immunoprecipitation Assay Protocol

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ChIP assay was performed using the Zymo-Spin ChIP kit according to the manufacturer’s protocol (Zymo Research). Briefly, FLS were serum starved for 24 hours and then fixed in 1% formaldehyde (Thermo Fisher Scientific) for 8 minutes at room temperature. After sonication, chromatin was immunoprecipitated with specific antibodies overnight at 4°C. The antibodies used were anti-H3K4me1 (ab8895, Abcam), anti-GR (catalog 12041, Cell Signaling Technology), and rabbit IgG (catalog 2729, Cell Signaling Technology). Complexes were then immunoprecipitated with protein A magnetic beads for 1 hour at 4°C and reverse-crosslinked at 65°C for 2 hours. The eluted DNA was purified and used as template for qPCR. A 10% input sample was used as control. The enhancer-specific primers, 5′-CTGAGACTGGAGGCTTTTGG-3′ (forward) and 5′-GACATCCCAGTTTCCACTGC-3′ (reverse), were designed using Primer3 software (42 (link)). MYT1 exon 1 primers were purchased from Cell Signaling Technology (catalog 4493).
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3

Western Blot Analysis of Stem Cell Markers

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Protein samples were extracted from mammospheres and cancer cells using lysis buffer. After electrophoresis using 10% sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE), the proteins were transferred to a PVDF membrane (Millipore, Burlington, MA, USA). The membrane was blocked with an Odyssey blocking buffer for 1 h at room temperature and then incubated overnight with primary antibodies. The antibodies were anti-c-Myc (551101, BD, San Jose, CA, USA); anti-Oct4 (LF-MA30482) and anti-GAPDH (LF-PA0018) (AbFrontier, Seoul, Korea); anti-YAP (sc-101199), anti-Lamin B (sc-365962), anti-CD44 (sc-7297), and anti-Sox2 (sc-365923) (Santa Cruz Biotechnology, Dallas, TX, USA); and anti-GR (#12041, Cell Signaling Technology, Danvers, MA, USA). After membranes were washed three times using Tris-buffered saline/Tween 20, all membranes were incubated with IRDye 680RD- and IRDye 800W-labeled secondary antibodies for 1 h at room temperature, and the signal images were determined with an Odyssey CLx (Li-Cor, Lincoln, NE, USA). Densitometric analysis of western blot has been done using Image Studio Ver 5.2 program of Odyssey CLx (Li-Cor, Lincoln, NE, USA).
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4

ChIP Assay for Glucocorticoid Receptor

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ChIP assay was performed by partially modifying the method described previously48 (link). INS-1D cells were fixed in formaldehyde solution (final concentration, 1%) for 10 min, washed using ice-cold PBS, and collected as before. The cell lysates were sheared by sonication and the DNA was analyzed on a 2% agarose gel. The DNA–protein complexes were immunoprecipitated with 2 μg of anti-GR (#3660, Cell Signaling Technology) or Normal Rabbit IgG (#2729, Cell Signaling Technology). The purified immunoprecipitated DNA was quantified by qPCR using GRE1 specific primers and SYBR green (see Table S8).
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5

Immunohistochemical Analysis of Brain Tissue Markers

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Brain tissues were fixed in 4% neutral buffered paraformaldehyde (pH = 7.4) and embedded in paraffin. The paraffin sections (5 μm) were deparaffinized in xylene and rehydrated in ethanol; then, antigen retrieval was performed by incubating in oiled 0.01 M sodium citrate buffer (pH = 6) and blocking endogenous peroxidase activity using 10% H2O2. To reduce nonspecific staining, the slides were immersed in Protein Block, Serum Free (Dako, Tokyo, Japan) for 15 min. For immunohistochemical staining, the sections (5 μm) were incubated with anti-BDNF (1:100, Abcam, Cambridge, UK), anti-GR (1:400, Cell Signaling Technology, Danvers, MA, USA) or anti-doublecortin (1:1000, Abcam, Cambridge, UK) and then incubated with biotinylated goat anti-rabbit IgG and streptavidin peroxidase complex (Nichirei Biosciences Inc., Tokyo, Japan) for 30 min at room temperature, stained with diaminobenzidine and then counterstained with hematoxylin. A light microscope (Olympus, BX50, Tokyo, Japan) connected to a digital camera was used for examining and photographing the slides. For quantification of doublecortin-positive cells in the DG of both hippocampal lobes, the number of immunopositive cells was counted in 10 randomly selected fields of sections, original magnification ×400, as previously described [72 (link)].
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6

Hippocampus Protein Expression Analysis

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The other side of hippocampus was applied for western blotting (Western Blotting Kit, Beyotime Institute of Biotechnology, China). The tissue was homogenized in cell lysis buffer (NP-40 lysis buffer) with protease inhibitor and it was ground by refiner before supernatant was kept in −20°C after centrifuge. The protein was electrophoretically resolved on 10% SDS-polyacrylamide gels and then transferred to nitrocellulose membranes at 100 mA for 2.5 h. After that, the membranes were blocked in skimmed milk for 1 h at room temperature and overnight at 4°C in anti-11β-HSD1 (1 : 1000; Cell Signaling Technology, USA), anti-GR (1 : 1000; Cell Signaling Technology, USA), and anti-β-actin (1 : 800; Cell Signaling Technology, USA), receptively. Then the membrane was incubated with HRP antibody (Boster Co., Wuhan, China) at dilution of 1 : 1000. Finally, the membranes were observed by the use of enhanced chemiluminescence kit (ECL, Amersham).
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7

Multiprotein Immunodetection Assay

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Primary antibodies: anti-GR (Cell Signaling Technology, #12041), anti-AR (23 (link)), anti-FOXA1 (Abcam, #ab23738), anti-TLE3 (Abcam, #ab94972), anti-H3K27ac (Active Motif, #39133), anti-α tubulin (TUB) (Santa Cruz Biotechnology, #sc-5286). Secondary antibodies: goat anti-rabbit (Invitrogen, #G-21234), goat anti-mouse (Zymed Laboratories, #81–6520), donkey anti-rabbit Alexa Fluor 647 (Thermo Fisher, #A-31573).
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8

Comprehensive Protein Characterization Protocol

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Primary antibodies: anti-GR (Cell Signaling Technology, #12,041, RRID:AB_2631286), anti-AR (custom polyclonal rabbit antiserum) [31 (link)], anti-FOXA1 (Abcam, #ab23738, RRID:AB_2104842), anti-EP300 (Santa Cruz Biotechnology, #sc-585, RRID:AB_2231120), anti-H3K27ac (Active Motif, #39,133, RRID:AB_2561016), anti-α tubulin (Santa Cruz Biotechnology, #sc-5286, RRID:AB_628411), anti-H3 (Abcam, #ab1791, RRID:AB_302613). Anti-AR recognize both full length AR and AR-V7 [29 (link)]. Secondary antibodies: goat anti-rabbit (Invitrogen, #G-21234), goat anti-mouse (Zymed Laboratories, #81–6520).
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9

Ubiquitination of Glucocorticoid Receptor

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HEK293 GR-/- cells were transfected with FLAG-tagged WT- or K154R-GR (pRK7-FLAG-GR) in combination with HA-tagged UBB (pcDNA3.1 HA-UBB; HA-UBB cDNA sequence [GenBank: NM_018955.4] with N-terminal HA-tag cloned into HindIII/EcoRI of pcDNA3.1) each, using the calcium phosphate method.55 (link) Cells were treated with 1 μM Dex alone or in combination with 1 μM MG132 (Sigma-Aldrich) for 24 h followed by harvesting, cell lysis and FLAG-IP as stated in the above section. Lysis/wash buffer was supplemented with 10 mM N-ethylmaleimide (NEM) in addition to other inhibitors to preserve the ubiquitination of proteins upon cell lysis. Immunoprecipitates were eluted by boiling beads in 2X Laemmli buffer, followed by SDS-PAGE and western blotting with anti-HA (Roche) and anti-GR (Cell Signaling Technology) antibodies.
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10

GR, c-Jun, c-Fos Interaction Analysis

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Coimmunoprecipitation was performed using the Pierce Classic Magnetic IP/Co-IP Kit (88804, Thermo Fisher Scientific) according to the manufacturer's instructions. Briefly, lysates of cells were precleared with Protein G beads and were subsequently incubated overnight at 4 C with anti-GR antibody (12041, Cell Signaling Technology) or normal rabbit IgG. Protein G beads were then added and incubated for an additional 2 h. After washing three times with cold PBS, Protein G beads were boiled in the loading buffer, and the coprecipitated complexes were further analyzed by western blotting analysis using anti-GR (12041, Cell Signaling Technology), antic-Jun (9165, Cell Signaling Technology), and anti-c-Fos (31254, Cell Signaling Technology) antibodies.
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