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61 protocols using rabbit anti ph3

1

Immunostaining of Drosophila Tissues

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Immunostaining was performed based on previous publication [15 (link)]. In brief, tissues were first dissected in 1X PBS (for guts) or in 4%formaldehyde (for thoraces), then fixed for 45 min at room temperature in 4%formaldehyde. After wash for 1 h in washing buffer (PBS, 0.5% BSA, 0.1% Triton X-100), tissues were incubated with primary antibodies and secondary antibodies diluted in washing buffer. Samples are then mounted and imaged with Zeiss AxioImager M2 with the apotome system. Images were then processed with ZEN and Image J software. Antibodies used in the studies:
rabbit anti-pH3 (Cat#06-570, Sigma-Aldrich) 1:1000,
rabbit anti-CREB (Cat#9197, Cell Signaling Technology), 1:800,
mouse anti-FK2(Cat#ENZ-ABS840-0100, Enzo Life Sciences),1:300,
mouse anti- Prospero (Cat# MR1A, Developmental Studies Hybridoma Bank, DHSB),1:100
rabbit anti-phospho-eIF2α(#Y407807, Applied Biological Materials),1:400,
anti-GAPDH (YEAEN, Cat#30210ES60) 1:2000.
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2

Imaging of Drosophila Eye-Antennal Discs

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Eye-antennal imaginal discs from wandering third instar larvae were dissected and fixed according to standard protocols. Primary antibodies used were: mouse anti-Eya 10H6 at 1:100 (Developmental Studies Hybridoma Bank, DSHB), rabbit anti-ßGal at 1:1000 (Cappel), mouse anti-CycB F2F4 at 1:100 (DSHB), rabbit anti-PH3 at 1:1000 (Sigma), rat anti-ELAV 7EBA10 at 1:1000 (DSHB), rabbit anti-HA 9110 at 1:1000 (Abcam), guinea pig anti-Hth at 1:300091 (link), rabbit anti-Hr46 at 1:50 (gift from Carl S. Thummel, University of Utah School of Medicine), mouse anti-CycA A12 at 1:10 (DSHB), mouse anti-Dacapo NP1 at 1:4 (DSHB), mouse anti-CycE at 1:20 (gift from Helena Richardson). Alexa-Fluor conjugated secondary antibodies and rhodamine phalloidin (R415) were from Molecular Probes. Images were obtained with the Leica SP2 confocal system and processed with Adobe Photoshop.
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3

Imaginal Disc Dissection and Immunostaining

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Imaginal discs were dissected and fixed according to standard protocols. Primary antibodies used were guinea-pig anti-Hth [74 (link)], rabbit anti-PH3 (Sigma), rabbit anti β-galactosidase (Cappel), mouse anti β-galactosidase (Sigma), mouse anti-CD2 (Serotec), rabbit anti-GFP (Molecular Probes), mouse anti-Ey (Clements et al., 2008) and rabbit anti-cyclin B [75 (link)]. Mouse anti-Eya, rat anti-ELAV (7E8A10), and mouse anti-cyclin B were from Developmental Studies Hybridoma Bank (Iowa University). Fluorescently labeled secondary antibodies were from Molecular Probes. Anti-mouse-HRP (Sigma) was used for immunoperoxidase staining. Digoxigenin labelled stg RNA probe was produced from cDNA clone LD47579 (BDGP). ImageJ was used to quantify pixel intensities (http://imagej.nih.gov/ij/).
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4

Immunostaining Drosophila Larval Brains

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Drosophila larvae were dissected in PBS, and larval brains were fixed in 3.7% formaldehyde with PBS + 0.3% Triton-100 (PBT) for 15 min. The samples were processed for immunostaining as previously described54 (link). Confocal images were taken from LSM710 and brightness and contrast were adjusted by Photoshop CS5.1. Primary antibodies used in this paper were guinea pig anti-Dpn (1:1000; J. Skeath), mouse anti-Mira (1:50, F. Matsuzaki), rabbit anti-Mira (1:500, W. Chia), mouse anti-Grh (1:10, AH Brand), rat anti-CD8 (1:250, Invitrogen, Cat#: MCD0800), rabbit anti-GFP (1:500, Molecular Probes, Cat#: A21311), rat anti-Elav (1:10, DSHB, Cat#: Rat-Elav-7E8A10), mouse anti-Pros (1:10, DSHB, Cat#: Prospero (MR1A)), mouse anti-Dac (1:5, DSHB, Cat#: mAbdac2-3), mouse anti-α-tubulin (1:200, Sigma, Cat#: T6199), guinea pig anti-Asl (1:200, G Rogers), mouse anti-γ-Tub (1:200, Sigma, Cat#: T5326), mouse Acetylated-Tub (1:100, Sigma, Cat#: T7451), rat anti-Kr (1:100, EADC, Cat#: 574), rabbit anti-Pdm1 (1:500, W. Chia & X. Yang), rabbit anti-PH3 (1:200, Sigma, Cat#: 06‐570), mouse anti-Dlg (1:200, DSHB, Cat#: 4F3 anti-discs large), rabbit anti-Klumpfuss (1:200, X. Yang) and guinea pig anti-Chro-C (1:500, this study). DNA was labelled by ToPro-3 (1:5000, Invitrogen, Cat#: T3605).
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5

Immunostaining of Wing Imaginal Discs

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Wing imaginal discs were dissected, fixed, and stained as previously described (Chabu and Xu, 2014; Pagliarini and Xu, 2003) . The primary antibodies used were rabbit anti-PH3 (1:1000, Sigma); rabbit anti-Diap1 (1:1000, Hermann Steller); rabbit anti-pWts (1:200, D. Pan), mouse anti-b-gal (1:1000, Sigma). Secondary antibodies were from Invitrogen. Specimens were imaged on a Leica TCS SP8 confocal microscope. Images were analyzed and processed with IMARIS (Bitplane, Switzerland) and illustrator software (Adobe).
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6

Immunostaining of Wing Imaginal Discs

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Wing imaginal discs were dissected, fixed, and stained as previously described (Chabu and Xu, 2014; Pagliarini and Xu, 2003) . The primary antibodies used were rabbit anti-PH3 (1:1000, Sigma); rabbit anti-Diap1 (1:1000, Hermann Steller); rabbit anti-pWts (1:200, D. Pan), mouse anti-b-gal (1:1000, Sigma). Secondary antibodies were from Invitrogen. Specimens were imaged on a Leica TCS SP8 confocal microscope. Images were analyzed and processed with IMARIS (Bitplane, Switzerland) and illustrator software (Adobe).
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7

Immunohistochemical Characterization of Neural Markers

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The following antibodies and dilutions were used: mouse anti-acetylated tubulin (Sigma; 1:500), rabbit anti-PH3 (Millipore; 1:500), mouse anti-SNAP25 (Synaptic Systems; 1:200), mouse anti-sodium channels (pan) clone K58/35 (Sigma; 1:500), mouse anti-SV2 (DSHB; 1:200), rabbit anti FIGQY (a gift from Matthew Rasband; 1:500). Primary antibodies were detected with appropriate secondary antibodies conjugated to either Alexa 488 or Alexa 568 (Molecular probes) at a 1:1000 dilution.
For immunostaining, embryos were fixed in 4% paraformaldehyde 1X PBS overnight at 4°C and stained as whole mounts. Sodium channels, SNAP25 and SV2 immunostainings were performed as described for NavCh staining in [33 (link)].
Images were taken on a Zeiss LSM510 system and a Leica SP8 confocal microscope.
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8

Zebrafish Immunostaining Protocol

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For all immunostainings, zebrafish embryos were fixed in 4% PFA, washed in 1xPBT 3 times for 5 minutes and digested in a Trypsin- 2.5% EDTA solution for 30 minutes (on ice). Subsequently, they were washed in PBT 4 times for 10 minutes. The first solution change was performed on ice. To avoid unspecific binding of the antibodies, the embryos were blocked in a solution containing 10% goat serum, 1%BSA and 0.8% Triton in PBT for minimum 1 hour at room temperature. Blocking solution was replaced by the primary antibody mix chicken anti-GFP antibody [Life technologies, diluted 1:200)] and either rabbit anti-rx2 [Charles River (diluted 1:200)], rabbit anti-PH3 [Millipore, (diluted 1:400)] or mouse anti-PCNA antibody [Millipore (diluted 1:250)] and DAPI (diluted 1:1000) in the following solution: 1% goat serum, 1% BSA and 0.8% Triton. Embryos were incubated at 4°C for 2 overnights with primary antibodies. After washing in PBT for several hours, incubation with the secondary antibodies [anti- chicken antibody, Alexa 488 [Dianova (diluted 1:250)] and anti-rabbit antibody, Alexa 647 [Thermo Fischer (diluted1:250)] and DAPI, diluted 1:1000 in 1% goat serum, 1% BSA and 0.8% Triton solution was carried out for 2 overnights.
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9

Intestine Immunostaining Protocol

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For standard immunostainings, intestines were dissected in 1 × PBS (10 mM NaH2PO4/Na2HPO4, 175 mM NaCl, pH 7.4), and fixed in 4% paraformaldehyde for 25 min at room temperature. Samples were washed with 1 x PBT (0.1% Triton X‐100 in 1 × PBS) and blocked in 3% BSA in 1 × PBT for 45 min. Primary antibodies were added to the samples and incubated at 4°C overnight. The following primary antibodies were used: mouse mAb anti‐Dl (C594.9B, 1:50, developed by S. Artavanis‐Tsakonas, DSHB), mouse mAb anti‐Prospero (MR1A, 1:100, developed by Chris Doe, DSHB), rabbit anti‐pH 3 (1:2000, Millipore), rabbit anti‐active caspase 3 (1:1000, Cell Signalling), and rabbit anti‐Yun (1:1000).25 Primary antibodies were detected by fluorescent‐conjugated secondary antibodies from Jackson ImmunoResearch Laboratories. Secondary antibodies were incubated for 2 h at room temperature. DAPI (Sigma‐Aldrich; 0.1 μg/ml) was added after secondary antibody staining. The samples were mounted in mounting medium (70% glycerol containing 2.5% DABCO). All images were captured using a Zeiss inverted confocal microscope and were processed in Adobe Photoshop and Illustrator.
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10

Antibody Staining Panel for Neural Development

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Primary antibodies used included rabbit anti-Kif2a (1: 1000, Abcam), rabbit anti-Tbr2 (1:500, Abcam), rabbit anti-Pax6 (1:200, Covance), mouse anti-beta III tubulin (TU20) (1:500, Abcam), mouse anti-nestin (1:500, Abcam), mouse anti-α tubulin (1:5000, CST), rat anti-Brdu (1:500, Abcam), rabbit and chicken anti-green fluorescent protein (1:500, GFP) (Invitrogen and Aves, respectively), rabbit anti-Ki67 (1:500, Thermo), rabbit anti-PH3 (1:300, Millipore), rabbit anti-cleaved caspase3 (1:300, Cell signaling), rabbit anti-AKT (1:500, CST), rabbit anti-p-AKT (1:500, CST), rabbit anti-β-catenin (1:200, Santa Cruz), mouse anti-GSK3β (1:200, Santa Cruz), and mouse anti-p-GSK3β (1:200, Santa Cruz). All the corresponding conjugated secondary antibodies were purchased from Invitrogen. Nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI) (Roche).
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