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Black 384 well low volume plates

Manufactured by Corning
Sourced in United States

The Black 384-well low-volume plates are a type of laboratory equipment designed to hold and handle small volumes of liquids or samples. These plates feature 384 individual wells, each with a low volume capacity, making them suitable for applications that require efficient use of limited sample quantities.

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2 protocols using black 384 well low volume plates

1

HTRF Assay for YEATS and BRD4 Binding

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All HTRF assays were performed by combining recombinant protein and synthetic histone peptide in assay buffer (25 mM HEPES pH 7, 20 mM NaCl, 0.2% Pluronic F-127, and 0.05% BSA) with 1 nM LanthaScreen Eu-anti-His Tag antibody (ThermoFisher, Cat. No, PV5597) and 8.9 nM SureLight allophycocyanin-streptavidin (Perkin Elmer, APC-SA, Cat. No. CR130-100). ENL YEATS, AF9 YEATS, and YEATS4 were used at 5 nM and BRD4 BD1 was used at 10 nM. ENL and AF9 assays were performed with H3(13-32)K27cr (13.3 and 100 nM, respectively), custom synthesized at ABclonal (N-terminal biotin, C-terminal amide); YEATS4 assay was performed with 25 nM H3(21-43)K27ac from Anaspec (Cat. No. AS-64846-1); and BRD4 BD1 assay was performed with 13.3 nM tetra-acetylated H4 (BioVision, Cat. No. 7144-01). Once all reagents were combined (with or without peptide), 10 μL was dispensed per well into black 384-well low-volume plates (Corning, Cat. No. 3821) and drug was added by pin tool transfer (Biomek FX). Assays were incubated for 2 or more hours before measurement of HTRF signal on a PHERAstar plate reader (BMG Labtech; simultaneous dual emission; excitation = 337 nm, emission 1 = 665 nm, emission 2 = 620 nm). HTRF signal (ratio of emission 1 to emission 2) from vehicle-treated wells (maximum signal) and no-peptide-control wells (minimum signal) were used to calculate percent inhibition for drug-treated wells.
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2

TR-FRET RAR Alpha Coactivator Assay

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All synthesized compounds were tested for their binding affinity by using time resolved fluorescence resonance energy transfer (TR-FRET) assay, which used a LanthaScreen® TR-FRET RAR alpha Coactivator Assay Kit (Invitrogen, Carlsbad, CA, USA). Briefly, all experiments were performed in black 384-well low-volume plates (Corning Inc., Corning, NY, USA) in dark at room temperature. The final assay volume was 20 μL. All dilutions were made in assay buffer (TR-FRET Coregulator Buffer D). The final DMSO concentration was 1%. A mixture of 5 nM RAR alpha LBD-GST, 5 nM TbAnti-GST antibody, 50 nM Fluorescein-D22 was added to the wells. The only variable is the agonist concentration (6.1 × 10−11~1.0 × 10−6 M final concentrations of each retinoid). The mixture was incubated for one hour in dark followed by fluorescence intensity determination on a SpectraMax M5 microplate reader (Molecular Devices Corporation, Sunnyvale, CA, USA) with 340 nm and 520 as excitation and emission wavelengths for terbium and 340 and 495 for fluorescein, respectively. Data were analyzed by using GraphPad Prism software (GraphPad Software, Inc., La Jolla, CA, USA) and FRET signal was determined for all treatments by dividing 520 nm/495 nm signals. Graphs plotted as fold change of FRET signal for compounds treatment over DMSO only treatment.
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