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17 protocols using ab155279

1

Immunohistochemical Analysis of Skin Biopsies

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Biopsies of dorsal skin were isolated and fixed overnight in 4% paraformaldehyde, washed with PBS, dehydrated, paraffin embedded, and sectioned at 5 μm. For antigen retrieval, the sections were incubated with 10 mM sodium citrate buffer, within a closed plastic container placed in a boiling waterbath, for 20 min. Sections were permeabilised with 3 × 5 min 0.1% Triton in PBS, blocked for 1 hr in 5% skim milk in PBS, and incubated overnight in 5% milk with primary antibodies. The following antibodies were used: goat anti-Dct at dilution of 1/1000 (Santa Cruz Biotechnology, sc-10451) and rabbit anti-Sox10, at 1/2000 (Abcam, ab155279). Sections were washed 3 × 5 min 0.1% Triton in PBS, and incubated with secondary antibodies, Alexa 488 donkey-anti-goat, and Alexa 555 donkey-anti-rabbit (Invitrogen) for 2 hr. Sections were subsequently incubated with 1/2000 Hoechst nuclear stain for 10 min, washed 3 × 5 min in PBS, dried and mounted with Vectashild.
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2

Immunolabeling for Myelination Markers

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The primary antibodies included Anti-beta III Tubulin [2G10] (1:1000, ab78078; Abcam, Cambridge, UK), Recombinant Anti-Cytokeratin 15 (1:200, ab52816; Abcam), Anti-beta III Tubulin (1:300, ab18207; Abcam), Recombinant Anti-SOX10 [EPR4007] (1:100, ab155279; Abcam), Monoclonal Anti-Myelin Basic Protein (MBP, 1:100, MAB386 Sigma-Aldrich), Monoclonal Anti-Sodium Channel, Pan antibody produced in mouse (1:500, S8809; Sigma-Aldrich), and polyclonal Anti-Caspr (1:1000, kindly provided by Elior Peles, PhD, Weizmann Institute of Science, Rehovot, Israel), Recombinant Monoclonal Anti-Mayelin Associated Glycoprotein [EPR24276] (MAG, 1:500, ab277524, Abcam).
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3

Western Blotting Analyses of Key Developmental Markers

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Western blot analyses were performed with 10 μg protein as described previously.75 (link) Total protein extracts were separated by SDS-polyacrylamide gel electrophoresis and blotted onto polyvinylidene fluoride membranes (Invitrogen, Karlsruhe, Germany). After blocking the membranes with 5% non-fat milk suspended in T-PBS (0.1% Tween 20, Sigma-Aldrich, Seelze, Germany), the membranes were incubated with the following primary antibodies in 1% non-fat milk at 4 °C overnight: anti-OTX2 (Abcam, Cambridge, UK, ab130238), anti-ISLET 1 (Abcam, ab109517), anti-SOX10 (Abcam, ab155279) and anti-GAPDH (Abcam, ab9485). The proteins were visualized using the ECL Pierce Fast Western Blot system (Thermo Fisher Scientific, Schwerte, Germany, 35050).
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4

Immunofluorescent Staining Protocol for Protein Analysis

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Luciferase assay was performed as described previously11 (link),16 (link). Dewaxed paraffin sections were used for immunofluorescent staining. The sections were incubated with rabbit polyclonal antibody raised against PITX1 (ab70273, 1:2000; Abcam), SOX9 (ab185966, 1:500; Abcam), SOX10 (ab155279, 1:10,000; Abcam), Ki-67 (pre-diluted, Nichirei, Tokyo, Japan) or cleaved Caspase3 (#9664, 1:400; Cell Signaling Technology) at 4 °C overnight. After being washed in T-TBS, the sections were incubated with secondary Alexa488-conjugated anti-rabbit IgG antibody (#8890, 1:500, Cell Signaling Technology) for 1 h at room temperature. After further washing, coverslips were placed on the glass slides using a water-soluble mounting medium. The slides were observed using fluorescence microscopy. Images were captured using an AxioImagerZ2 fluorescence microscope (Carl Zeiss GmbH, Jena, Germany) with a 40 × objective.
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5

Isolation and Purification of Schwann Cells

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SCs were isolated as previously described (39 (link), 40 (link)). In short, sciatic nerves were digested with dispase II (Sigma-Aldrich) and collagenase type I (Sigma-Aldrich) overnight. The resulting single-cell suspension was incubated for 5 d in a solution containing 2 µM forskolin (Sigma-Aldrich) and 10 nM neuregulin (PeproTech) to promote SC differentiation. After the separation of fibroblasts by magnetic cell selection, an SC purity above 95% was achieved. SC purity was controlled by FACS analysis with the SC marker SOX10 (1:1,000, rabbit recombinant monoclonal antibody, ab155279, RRID:AB_2650603, Abcam) after selection of viable cells (fixable viability dye eFlour 780, Thermo Fisher Scientific) as described by the manufacturer’s protocol.
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6

Western Blotting Protocol for Protein Detection

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Western blotting was performed as described previously37 (link). Membranes were blotted with rabbit polyclonal antibody against human PITX1 antigen (ab70273, 1:2,000; Abcam, Cambridge, MA, UK), rabbit monoclonal antibody against human SOX9 antigen (ab185966, 1:2000; Abcam), rabbit monoclonal antibody against human SOX10 antigen (ab155279, 1:2000; Abcam), mouse monoclonal antibody against FLAG antigen (F1804, 1:2000; Sigma), or with polyclonal antibody against α-tubulin (PM054-7, 1:5000; MBL, Tokyo, Japan) and the appropriate standard peroxidase-labeled anti-mouse IgG and anti-rabbit IgG secondary antibodies, according to the manufacturer's instructions (GE Healthcare, Piscataway, NJ, USA). Immunoreactive bands were visualized using the ECL detection system (Pierce, Rockford, IL, USA).
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7

Immunohistochemistry of Enteric Nervous System

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Immunohistochemistry was performed on recipient mouse colon, as previously described [7 (link), 22 (link)]. Wholemount preparations of the LMMP and enteric neurospheres were fixed in 4% paraformaldehyde. Wholemount LMMP or neurosphere preparations were permeabilized with 0.1% Triton X-100 and blocked with 10% donkey serum. Primary antibodies were diluted in 10% donkey serum and included goat anti-GFAP (1:200, Abcam, ab53554), human anti-HuC/D (Anna1, 1:16,000, kindly gifted by Lennon laboratory) mouse anti-HuC/D (1:50, Invitrogen, A-21271), rabbit anti-nNOS (1:100, Cell Signaling, C7D7), rabbit anti-Sox10 (1:400, Abcam, ab155279), and mouse anti-neuronal class III conjugated β-tubulin (Tuj1; 1:400; Covance, Dedham, USA). Secondary antibodies included anti-rabbit IgG (1:500; Alexa Fluor 488; Fisher Scientific Life Technologies) and anti-human IgG (1:200, Alexa Fluor 594; Fisher Scientific Life Technologies). Cell nuclei were stained with DAPI (Vector Labs, Burlingame, CA) and mounted with aqua-poly/mount (Fisher Scientific Polysciences Inc.). Images were taken using Nikon A1R laser scanning confocal microscope (Nikon Instruments, Melville, NY) or Keyence BZX-700 All-In-One Microscopy system (Keyence America, Itasca, IL).
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8

Immunophenotyping of Expanded EPI-NCSCs

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Immunostaining against neural crest stem cell marker (nestin), neural crest cells marker (SOX10), immature neurons markers (doublecortin and β‐III tubulin), and glial marker (GFAP) were performed to verify expanded EPI‐NCSCs. Briefly, cultured EPI‐NCSCs were fixed with 4% paraformaldehyde and washed with PBS containing 0.05% Tween‐20. Then, cells were blocked with 1% bovine serum albumin containing 0.2% triton X‐100 and incubated overnight at 4°C with primary antibodies: rabbit anti‐nestin, anti‐SOX10, anti‐doublecortin, anti‐β‐III tubulin and anti‐GFAP (#ab93157, ab155279, ab77450, ab18207, and ab7260; Abcam). Following washing with PBS, cells were incubated with FITC‐conjugated secondary antibody (Sigma, #F1262) and counterstained with DAPI (Sigma, #D9564). Images were captured with the Olympus inverted fluorescence microscope.
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9

ChIP-seq protocol for SOX10 and H3K27ac

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ChIP was performed as described in [9 (link)] using approximately 1x107 SK-MEL-28 clonal CRISPRi cells per assay and 5 μg of the following antibodies: anti-SOX10 rabbit monoclonal antibody (Abcam; ab155279), anti-Histone H3K27ac rabbit polyclonal (Active Motif; #39133) or anti-rabbit IgG control (Merck; PP64). qPCR primers used to amplify SOX10 bound genomic sequences are shown in S7 Table.
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10

Immunohistochemical Analysis of Neural Cell Markers

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A group of sections were randomly selected from the three additional groups of sections from each mouse. The sections were rinsed with PBS-T, successively infiltrated with 2 mol/L HCl for 10 min (only required for the anti-BrdU antibody), subjected to antigen retrieval in citrate buffer (0.01 M, 99°C) for 30 min, and incubated with normal goat serum for 2 h at 37°C. Then, the primary anti-CNPase (ab6319, Abcam), anti-Olig2 (rabbit, ab109186, Abcam), anti-SOX10 (ab155279, Abcam), anti-bromodeoxyuridine (BrdU; ab6326, Abcam), anti-5-HT1AR (ab85615, Abcam), anti-platelet-derived growth factor alpha receptor (PDGFαR; ab96569, Abcam), anti-Aβ (ab11132, Abcam), and anti-CDKN2A/p16INK4a (p16; ab201980, Abcam) antibodies were added at a dilution of 1:500 in PBS, incubated at 4°C for 72 h and then rewarmed at 37°C for 2 h. The appropriate DyLight 405, DyLight 488, and DyLight 549-conjugated secondary antibodies (A23140, A23210, and A23320, respectively, Abbkine, P. R. China) were incubated with the sections at a 1:200 dilution. Finally, the sections were mounted on gelatin-coated slides with antifade solution to reduce fluorescence quenching.
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