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1200 series lc

Manufactured by Agilent Technologies
Sourced in United States

The 1200 Series LC is a liquid chromatography system manufactured by Agilent Technologies. It is designed to perform high-performance liquid chromatography (HPLC) analysis. The system includes components such as a solvent delivery module, an autosampler, a column thermostat, and a detector.

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28 protocols using 1200 series lc

1

Quantitative LC-MS Analysis of Target Analyte

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A liquid chromatograpy mass spectroscopy (LC-MS) analysis was achieved using an Agilent 6410B triple quadrupole (Agilent Technologies, Wilmington, DE, USA) equipped with electrospray ionization (ESI) (Agilent Technologies, Wilmington, DE, USA), according to a manufacturer’s protocol. Briefly, 100 mg sample dissolved in 1 mL of MeOH and centrifuged. Volume of sample injection into HPLC system (1200 Series LC, Agilent Technologies, Wilmington, DE, USA) was 5 μL. 150 cm × 2 mm2, 4 μm Synergi Hydro-RP 80 Å column (Phenomenex, Torrance, CA, USA) was used for LC separation at 30 °C. ESI activated at 3 kV and 380 °C as a source temperature. LC-ESI-MS was measured under the following conditions: capillary voltage = 3 kV, cone voltage = 30 kV, source offset = 30 V, nebulizer pressure = 15 bar, desolvation gas flow-rate = 650 L/h, cone gas flow-rate = 150 L/h, fragmentor voltage = 90 V, collision voltage = 20 V. 0.1% formic acid in distilled water as mobile phase A and 0.1% formic acid in acetonitrile as mobile phase B separated the sample and went into the ESI chamber at a flow rate of 0.5 mL/min for 20 min. Sample was detected by multiple-reaction monitoring mode (MRM) of monitoring the transition pairs at m/z 252.1/136.1.
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2

Detailed Chemical Protocol and Analysis

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All chemical reagents were
obtained from commercial suppliers and used without further purification,
unless otherwise stated. Reactions were run without taking precautions
to exclude air or moisture, unless otherwise noted. Normal-phase column
chromatography was performed using silica gel columns and ACS grade
solvents. Analytical thin-layer chromatography (TLC) was performed
on EM Reagent 0.25 mm silica gel 60 F254 plates and visualized by
UV light. 1H NMR, 13C NMR, and 19F NMR spectroscopy were recorded on Bruker 400 MHz or Bruker Avance
III 500 MHz spectrometers. The chemical shifts for 1H NMR
and 19F NMR are reported to the second decimal place in
parts per million (ppm). Proton coupling constants are expressed in
hertz (Hz). Standard abbreviations were used to denote spin multiplicity
for 1H NMR data. The chemical shifts for 13C
NMR are reported to the first decimal place in ppm. The corresponding
residual solvent peaks (CDCl3,1H δ = 7.27
ppm,13C δ = 77.16 ppm; CD3OD-d4, 1H δ = 3.31 ppm, 13C δ = 49.00 ppm; DMSO-d6, 1H δ = 2.50 ppm, 13C δ = 39.52 ppm)
were used as an internal standard. High-resolution mass spectrometry
(HRMS) values were measured and calculated with an Agilent 6545 QTOF
mass spectrometer coupled with an Agilent 1200 series LC, with direct
loop injection (no column). All compounds presented in the manuscript
are >95% pure by HPLC analysis.
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3

Targeted Proteomics for Biomarker Detection

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Targeted proteomics was carried out as previously described (Stergachis, MacLean, Lee, Stamatoyannopoulos, & MacCoss, 2011) using either a 1200 Series LC (Agilent Technologies, USA) combined with a QTRAP 3200 MS/MS system (Sciex, USA), or a Shimadzu HPLC combined with a QTRAP 6500 MS/MS system (Sciex). Bovine serum albumin (BSA) was used as an internal control (10 ng/µl; target peptide: YLYEIAR). This was added to the crude extract before 200 µg of total protein was digested per sample. The targeted proteomics method was developed with Skyline (MacLean et al., 2010), and the peptide VDITQIK was used to detect chloramphenicol acetyltransferase (CatP, backbone marker), whereby the peptide VLSVITEPILPFER was used to detect IspS. The peptides were separated in a linear gradient by changing the ratio between buffer A (2% acetonitrile, 98% water, 0.1% formic acid) and buffer B (98% acetonitrile, 2% water, and 0.1% formic acid) from 95:5 to 5:95 with a flow rate of 0.4 ml/min.
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4

RP-HPLC Quantification of RU In Vitro

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An isocratic RP-HPLC was adopted to quantify RU in all in vitro samples according to Kuntić et al. (2007 (link)) using Agilent Technologies (Santa Clara, CA, USA) 1200 series LC equipped with G 1311 A solvent delivery pump and G1315D diode array detector. A Kromasil® C18 reverse-phase analytical column (5 μm particle size; 250 × 4.6 mm ID) was used and maintained at temperature =40 °C. The mobile phase constituted of a binary mixture of methanol–water 1:1 (v/v), pH 2.8 (adjusted with phosphoric acid) adjusted at flow rate of 1 mL/min. The wavelength of UV detector was set at λmax 360 nm. The method was first validated according to the International Conference on Harmonization guidelines (ICH, Topic Q2A, Validation of Analytical Procedures: Methodology, PMP/ICH/281/95). The data was analyzed using ChemStation B.04.01 software (Santa Clara, CA, USA).
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5

Quantitative LC-MS/MS Analysis of Analyte

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Agilent 6410B Triple Quadrupole liquid chromatography mass spectroscopy (LC MS; Agilent Technologies, Wilmington, DE) equipped with an Electrospray ionization (ESI) source was used for the analysis. Sample weighing 100 mg was mixed with 1 mL of MeOH and centrifuged. Aliquots of 5 µL of the processed samples were injected into the HPLC system (1200 Series LC, Agilent Technologies) fitted with Phenomenex Synergi Hydro-RP 4 µm, 80 Å, 150 × 2 mm2 column, maintained at 30°C. ESI was operating at +3000 V and a source temperature of 380°C. Capillary voltage, cone voltage, and source offset were set at 3 kV, 30 kV, and 30 V, respectively. The gas flow of desolvation and the cone was set at 650 L/h and 150 L/h, with a nebulizer pressure of 15 bar. A mobile phase composed of 0.1% formic acid in distilled water (buffer A) and 0.1% formic acid in acetonitrile (buffer B) was used to separate the analysis specimens and pumped into the ESI chamber at a flow rate of 0.5 mL/min for 20 minutes. Fragmentor voltage and collision voltage were set at 90 and 20 V, respectively. Detection of the sample was carried out in the multiple-reaction monitoring mode (MRM) by monitoring the transition pairs of m/z 252.1 → 136.1.
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6

Spectroscopic Characterization of Compound

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For IR spectroscopy, the sample was first dissolved in methanol at 0.05 g mL−1. A drop of this solution is deposited on surface of KBr cell. The solution was then evaporated to dryness and the film formed on the cell is analyzed directly on a Nicolet IN 10 Micro FTIR spectrometer by transmission mode (Supplementary Data 2). For UV spectroscopy, the same solution was analyzed by the DAD detector of an Agilent 1200 series LC and scanned from 210 to 600 nm (Supplementary Data 2). For optical rotation, the same solution was analyzed on a Anton Paar MCP100 polarimeter and the specific rotation was [α]25D = + 7.25 (c = 0.035, CHCl3). Values represent means ± s.d. of three technical replicates.
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7

LC–MS/MS Quantification of DMP and 3,4-HDMP

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LC–MS/MS (Agilent) was performed as previously described (8 (link)) using an Agilent 1200 series LC and 6470 triple quadrupole tandem mass spectrometer. In brief, DMP was quantified using m/z 97.4→56.2 and qualified using m/z 97.4→70.2, and 3,4-HDMP used m/z 99.2→57.2. The same Phenomenex Kinetex biphenyl column (50 × 3 mm, 2.6 µm) was used, and a second Phenomenex Kinetex C18 column (50 × 3 mm, 2.6 µm) was also used to identify whether the stationary phase played a specific role in the chromatography. Perfluorooctanoic acid (0.01%) in water (phase A) and methanol (phase B) was used for quantification and the flow rate was optimized to 0.4 mL/min, with an injection volume of 1 µL. The gradient started with 20% phase B for 0.5 min and then increased to 80% by 4 min, held until 7.5 min and then returned to 20%.
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8

Comprehensive Spectroscopic Characterization

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All 1H spectra were recorded
at 25 °C with a Bruker Avance spectrometer operating at 300.13
MHz and referenced to the protonated solvent residual. Mass spectra
(ESI+) were obtained with a Bruker micrOTOF II mass spectrometer
with an Agilent Technologies 1200 Series LC. The UV–vis spectra
were acquired on a Hewlett-Packard 8752A diode array spectrometer.
Elemental analyses were performed by Galbraith Laboratories, Inc.
of Nashville, TN, or by Kolbe Microanalytical Laboratory in Oberhausen,
Germany. Electrochemical measurements were performed using a CHI 620C
electrochemical analyzer workstation with a Ag/AgCl reference electrode,
glassy carbon working electrode, Pt wire as the auxiliary electrode,
and [nBu4N][PF6]
as the supporting electrolyte. Under these conditions, the Cp2Fe+/Cp2Fe couple consistently occurred
at +0.50 V. Spectroelectrochemical measurements were made with an
Ocean Optics HR2000 spectrophotometer along with a Pine Research Instruments
platinum honeycomb working electrode and a Ag/AgCl reference electrode.
Procedural details regarding crystal growth, X-ray diffraction data
collection, data processing, and structure solution and refinement
are deferred to the Supporting Information (SI). Unit cell data and selected refinement statistics for the
compounds that have been structurally identified are presented in Table 1; more complete crystallographic
data are summarized in Table S1.
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9

Global Profiling of Lipid Mediators

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Global profiling was performed on an Agilent 6220 ESI-TOF online with an Agilent 1200 Series LC in positive and negative modes based on known protocol;27 (link) co-injection of 6-keto-PGF was performed on identical instrument in negative mode. Tandem MS and quantification of 6-keto-PGF and AA in whole cell lysates were performed on an Agilent 6410 Triple Quad MS online with an Agilent 1200 Series LC. Additional details are in Supporting Information.
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10

iTRAQ Quantitative Proteomics Workflow

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In-solution trypsin digestion and iTRAQ labeling were carried out essentially as described previously [12 (link)]. Peptides from technical replicate from adjacent non-tumor samples were labeled with iTRAQ labels 114 and 115 and gallbladder adenocarcinoma were labeled with iTRAQ labels 116 and 117. Labeling was carried out at room temperature for 1 h and was quenched using water.
SCX fractionation was performed as described earlier [12 (link)]. Pooled iTRAQ labeled samples were mixed with SCX solvent A (10 mM potassium phosphate buffer in 20% ACN, pH 2.8). Poly-SULFOETHYL A column (PolyLC, Columbia, MD) (200 Å, 5 μm, 200 × 2.1 mm) was coupled to 1200 Series LC (Agilent Technologies, Santa Clara, CA). Samples were washed for 10 min using 100% solvent A. Linear gradient of 5–50% solvent B (350 mM KCl in solvent A, pH 2.85) was applied for 40 min. Twenty-eight fractions were collected and desalted using stage-tips as described earlier [13 (link)].
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