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16 protocols using eclipse te300 fluorescent microscope

1

Cellular Uptake of Fluorescent Nanoparticles

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To investigate cellular uptake, live-cell fluorescence microscopy was used to image GIN8, GIN28 and U87 cells. NPs for uptake experiments were prepared as previously described but were formulated as 10% wt/wt of mPEG5000-(LA)50-(TBPC)50-Cy5 (P2-Cy5) and 90% wt/wt mPEG5000-(LA)50-(TBPC)50 (P2) and diluted to a final concentration of 50 µg/mL in 10% (v/v) FBS containing DMEM (no phenol red). GIN8, GIN28 and U87 cells were seeded in CellView™ 35 mm diameter glass-bottom cell culture dishes at a density of 2.5 × 105 cells per dish and cultured for 24 h. Cy5-NPs (50 µg/mL) were incubated with cells for 0.5, 2 and 4 h at 37 °C with 5% CO2. Following exposure, NP solutions were removed and cells washed three times with ice-cold PBS. Cells were then stained with 10 µg/mL Hoechst 33342 (Thermo-Fisher) or 10 µg/mL Hoechst 33342 and 50 nM Lysotracker green DND-26 (Thermo-Fisher) applied in Hank’s Balanced Salt Solution (HBSS) for 30 min. Staining solution was removed and cells washed twice with PBS. FluoroBrite DMEM was added to wells and cells were imaged on an inverted Nikon Eclipse TE 300 fluorescent microscope on DAPI, FITC and Cy5 filters. Images were processed using ImageJ software (1.52f) and the Coloc 2 plug in was used for calculation of Pearson’s correlation coefficient for co-localisation studies.
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2

Immunofluorescent Staining of FLAG-CASZ1b

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Cells were cultured in 8-well Lab-Tek Chamber Slides (Cat. no. 177402) for indicated time period. Cells were fixed, permeabilized, blocked, and stained as described previously28 (link). For indirect immunofluorescent cell staining, an anti-FLAG M2 monoclonal antibody and an Alexa Fluor 594-conjugated goat anti-mouse antibody were used to detect FLAG-CASZ1b or mutant constructs. An anti-MHC antibody and an Alexa Fluor 594-conjugated goat anti-mouse antibody were used to detect MHC. Stained cells were imaged and analyzed using a Nikon Eclipse TE300 fluorescent microscope.
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3

Fluorescent Imaging of HIF-1α

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Cells were seeded onto microscope slides and fixed with 4% paraformaldehyde. Slides were blocked with 5% BSA (Sigma) + 1X TBST at room temperature for 1 h and then probed overnight at 4°C with anti-HIF-1α antibody (1:100 dilution). Slides were washed and probed with a Rhodamine Red Goat anti-mouse secondary antibody (Molecular Probes/Invitrogen) at a 1:200 dilution in 5% BSA. Localization and expression was visualized with a Nikon Eclipse TE-300 fluorescent microscope with excitation at 518 nm and emission at 605 nm. Fluorescent images were captured using a CoolSnap digital camera with Metamorph imaging software (Molecular Devices, Sunnyvale, CA).
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4

Lentiviral-Mediated Luciferase Expression

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Luciferase cDNA was amplified by PCR, purified through agarose gel electrophoresis, and subcloned into BamHI and EcoRI sites of pLenti-pgk-puro vector (obtained from Viral Vector Core, UTHSC). The pLenti-Luc-mKate-pgk-puro and pLenti-pgk-puro lentiviral (empty vector for mock transfection) vectors were packaged in 293T cells [13 (link)]. The lentiviral vectors were used to transduce the U87 glioma cell line in the presence of 6 μg/mL polybrene (Sigma-Aldrich, St. Louis, MO). Pools of stably transfected cells (U87Luc and U87Mock) were then selected by growing the cells in 1 μg/ml puromycin. Transduction efficiency was determined by using Nikon Eclipse TE300 fluorescent microscope.
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5

NICHE-Mediated Localized Immunosuppression

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F344 rats (n = 4) were implanted with 2 NICHE (1 in each flank), loaded with 5 × 105 BM-MSCs and vascularized for 6 weeks. For each rat, one NICHE drug reservoir was loaded with 9 mg CTLA4Ig (30 mg/mL) and 0.6 mg ALS (2 mg/mL) for local Immunosuppressant (IS) release NICHE. The contralateral NICHE drug reservoir was loaded with saline and served as a control. Two weeks later, NICHE were harvested and processed for histology and VEGF quantification. For functional blood vessel staining, following pressure-cooker-based epitope retrieval, sections were stained with primary antibodies CD31 (NB100-2284, Novus Biologicals, 1:200), VE Cadherin (36-1900, Invitrogen, 1:25), and eNOS (ab300071, Abcam, 1:50). Anti-rabbit Alexa Flour 555 (A-21428, Invitrogen, 1:200) was used as secondary antibody. Imaging was performed using a Nikon Eclipse TE300 Fluorescent Microscope in the FL2 channel (585 ± 20 nm). Fluorescence intensity was measured by 2 independent observers using the NIS-Elements Basic Research software. VEGF was quantified from tissue lysate using Bio-Plex Pro Rat Cytokine VEGF Set (#171L1026M) magnetic bead-based assay (Bio-Rad Laboratories) on the Bio-plex platform (Bio-Rad), according to manufacturer’s instructions.
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6

Immunofluorescence Staining of mpPHH Cells

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For immunofluorescence staining, mpPHH cultures were fixed and stained using as primary antibodies a rabbit polyclonal anti-NuMa antibody (catalog no. ab97585; Abcam) and a mouse monoclonal anti-CK18 antibody (catalog no. ab82254; Abcam). AlexaFluor 488 and 594 (Thermo Fisher) of the corresponding species were used as secondary antibodies. Nuclei were stained with DAPI. Cells were imaged using a Nikon Eclipse TE300 fluorescent microscope and processed using ImageJ.
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7

Quantitative Lung Vascularization Analysis

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5 μm thick lung sections were rehydrated then treated with Proteinase K (Sigma-Aldrich, St. Louis, MO, 20 μg/ml) in TE buffer (50 mM Tris Base, Amresco, Solon, OH, 1 mM EDTA, Fisher Scientific, Waltham, MA, 0.5% Triton X-100, Fisher Scientific, pH 8) in a humidified chamber at 37°C. After 15 minutes, sections were allowed to return to room temperature for 10 minutes and rinsed with Tris-buffered saline containing 0.1% Tween-20 (TBST) before being blocked at room temperature with 5% bovine serum albumin (BSA) in TBST for 30 minutes. Sections were incubated with von Willebrand Factor (vWF) primary antibody (Dako, Carpenteria, CA; 1:50 dilution overnight at 4°C), followed by Rhodamine Red-anti-rabbit secondary antibody (Fisher Scientific, 1:100 dilution, 1 hour at room temperature) in blocking solution as previously described [6 (link), 10 (link)].
8 images per animal were randomly captured with a Nikon Eclipse TE-300 fluorescent microscope under 10X magnification. Small vessels (<100 μM) were counted and averaged per animal in a blinded fashion.
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8

Immunofluorescence Staining of iPSCs

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iPSCs were plated on Matrigel-coated petri dishes with optical glass centers (MatTek) and cultured until sufficiently confluent for passage. Cells were fixed with 4% PFA for 15 min at room temperature, washed twice with PBS, permeabilized with 0.4% Triton X-100 in PBS for 5 min at room temperature, and washed twice with PBS. Fixed and permeabilized cells were then blocked in PBS containing 0.4% Triton X-100 and 5% goat serum overnight at 4 °C. The primary antibody was applied at the specified dilution (Additional file 8: Table S1) in PBS containing 2% goat serum and 0.4% Triton X-100 for 2 h at room temperature or overnight at 4 °C. Cells were then washed 4 times with PBS, and the secondary antibody (Additional file 8: Table S1) was added in PBS containing 0.4% Triton X-100 and 5% goat serum for 2 h at room temperature. Cells were washed 4 times in PBS and imaged on an Eclipse TE300 fluorescent microscope (Nikon).
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9

Immunofluorescent Staining of GAP43

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Cells were cultured in 8-well Lab-Tek Chamber Slides (Cat. No. 177402) for indicated time. Cells were fixed, permeabilized, blocked, and stained as described previously [28 (link)]. For indirect immunofluorescent cell staining, an anti-GAP43 monoclonal antibody and an Alexa Fluor 594-conjugated goat anti-mouse antibody were used to detect GAP43. Stained cells were imaged and analyzed using a Nikon Eclipse TE300 fluorescent microscope.
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10

Lentiviral-Mediated Luciferase Expression

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Luciferase cDNA was amplified by PCR, purified through agarose gel electrophoresis, and subcloned into BamHI and EcoRI sites of pLenti-pgk-puro vector (obtained from Viral Vector Core, UTHSC). The pLenti-Luc-mKate-pgk-puro and pLenti-pgk-puro lentiviral (empty vector for mock transfection) vectors were packaged in 293T cells [13 (link)]. The lentiviral vectors were used to transduce the U87 glioma cell line in the presence of 6 μg/mL polybrene (Sigma-Aldrich, St. Louis, MO). Pools of stably transfected cells (U87Luc and U87Mock) were then selected by growing the cells in 1 μg/ml puromycin. Transduction efficiency was determined by using Nikon Eclipse TE300 fluorescent microscope.
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