The largest database of trusted experimental protocols

4 protocols using rabbit anti h3k27me3

1

En Face Staining of Mouse Aorta

Check if the same lab product or an alternative is used in the 5 most similar protocols
En face staining was performed as previously described in detail 43 (link), with minor modifications 42 (link), 44 (link). Mouse aortas were collected after perfusion with saline and neutrally buffered 4% PFA. Aortic segments were then permeabilized with 0.1% Triton X-100 in PBS for 10 min and blocked with 10% normal goat serum (Invitrogen) in Tris-buffered saline (TBS) containing 2.5% Tween-20 for 30 min at room temperature. Next, aorta segments were incubated with rat anti-VE-Cadherin (1:100; #555289, BD Bioscicence), rabbit anti-EZH2 (#6263, ProSci) or rabbit anti-H3K27me3 (#39155, Active Motif) antibody overnight at 4 °C. After rinsing with washing buffer 3 times, aortic segments were incubated with Alexa Fluor 488-conjugated goat anti-rat and Alexa Fluor 546-conjugated goat anti-rabbit secondary antibodies (1:1,000; Thermo Fisher Scientific) for 1 h in darkness at room temperature. Finally, aortic segments were carefully whole mounted (with lumen side up) in the ProLong Gold-antifade Mounting Media (Invitrogen) for confocal microscopy (IX81, Olympus) with 60x or 40x oil lens. All animal procedures conformed to the Guideline for the Care and Use of Laboratory Animals published by the U.S. National Institutes of Health and were approved by the Institutional Animal Care and Use Committee of the University of Rochester Medical Center.
+ Open protocol
+ Expand
2

ChIP Assay in J-Lat A2 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
J-Lat A2 cells were fixed with 1% formaldehyde for 10 min at room temperature, and ChIP assays were performed using the ChIP-IT Express Enzymatic kit (Active Motif 53009) according to the manufacturer’s protocol. For each ChIP reaction, 2 μg of the following antibodies were used: control rabbit IgG (Bethyl P120–101), rabbit anti-H3 (Invitrogen PA5–31954), rabbit anti-H4 (Invitrogen 720166), rabbit anti-H3K9me3 (Active Motif 39765), rabbit anti-H3K27me3 (Active Motif 39155), rabbit anti-Ac-H3 (Millipore 06–599), rabbit anti-Ac-H4 (Millipore 06–598), rabbit-anti-H4K5,8,12Ac (Invitrogen pa5–40083), mouse-anti-H4K16Ac (Invitrogen MA5–27794), rabbit anti-Brd4 (Thermo Fisher 702448), mouse anti-FLAG (Sigma F1804), rabbit anti-KAT8 (Active Motif 61245), rabbit anti-BRG1 (Cell Signaling 49360), and rabbit anti-ARID1A (Cell Signaling 12354). qPCR was performed with the primers listed in Table S1. Signals obtained by qPCR were normalized to those of input DNA, and the averages from triplicate qPCR reactions were used to generate standard deviation depicted by error bars. Two-tailed Student’s t-tests were conducted, and the different significance levels were marked by 1–3 asterisks (*: p < 0.05, **: p < 0.01, and ***: p < 0.001).
+ Open protocol
+ Expand
3

KSHV ChIP-seq Assays with Epigenetic Modifications

Check if the same lab product or an alternative is used in the 5 most similar protocols
ChIP assays were performed as described previously with minor modifications [73 (link)]. Briefly, KSHV iSLK or BCBL1 cells were mock treated or treated with 3.5% 1, 6-HD for 1 hr. The cells (~ 1 x107) were crosslinked in 1% formaldehyde for 15 min with vigorous shaking at room temperature, quenched in 0.125 M glycine for 5 min, and washed two times with PBS prior to ChIP lysis. For ChIP in DAXX depletion, iSLK cells were infected with lentiviruses encoding shDAXX or shControl. At 48 hrs post-infection, cells were expanded and cultured under puromycin (1 μg/ml) selection for 4 days. At day 6 post-infection, the selected cells were collected and subject to ChIP analysis. The antibodies used in ChIP assays include rat polyclonal anti-HHV8 or anti-LANA [LN53] (Abcam, ab4103), rabbit anti-H3K4me3 (EMD Millipore, 07–473), rabbit anti-H3K9me3 (Diagenode, C15410056), rabbit anti-H3K27me3 (Active Motif, 39155), rabbit anti-H3K27Ac (Abcam, ab4729), rabbit anti-H3 (EMD Millipore, 07–690), and rabbit IgG (Santa Cruz Biotechnology).
+ Open protocol
+ Expand
4

Western Blot and ChIP Antibodies

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following primary antibodies were used in western blot, immunofluorescence or chromatin immunoprecipitation assays as indicated: mouse anti-c-Myc (ThermoFisher cat#9E10), mouse anti-His (Santa Cruz cat#sc57598), rabbit anti-EZH2 (Invitrogen cat#36–6300), rabbit anti-SUZ12 (Cell signaling cat#D39F6), rabbit anti-H3k27me3 (Active motif Cat#39155), rabbit anti-H3k4me3 (EMD Millipore cat#07–473), rabbit anti-βactin (Abcam cat#ab8227), rabbit anti-Histone H3 (Abcam cat#ab1791), mouse anti-Tax (cat#168-A51 from the National Institutes of Health AIDS Research and Reference Reagent Program), mouse anti-HBZ (a gift from J.M. Péloponèse), rabbit anti-E(z), rabbit anti-SUZ12 (a gift from J. Müller), mouse anti-Relish (DSHB cat#C21F3) and anti-GAPDH (B2534M-HRP Abnova), mouse anti-c-Myc-tag (9E10) (Abcam cat#ab32), rabbit anti-EZH2 (Merck Millipore cat# 07–689), Goat anti-mouse Alexa Fluor-488 (Abcam cat≠150113), Goat anti rabbit -rabbit Alexa Fluor-594 (Abcam cat ≠150080).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!