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11 protocols using src inhibitor 1

1

Evaluation of HGF and Src Inhibitors

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NT2D1 embryonal carcinoma cell were purchased from the ATCC. This cell line was cultured in DMEM (Sigma Aldrich, cat. D6546, St Louis, MO, USA) supplemented with 10% Foetal Bovine Serum (FBS Gibco, cat. 10270, Gland Island, NY, USA), L-Glutamine (Sigma Aldrich, cat. G7513) and penicillin/streptomycin (Sigma-Aldrich, cat. P0781). The cells were used from passage 15 to 35. Mycoplasma testing was routinely done with the N-GARDE Mycoplasma PCR Reagent set (Euro-Clone, cat. EMK090020, Milano, Italy).
The cells were treated with 40 ng/mL of HGF (Human Recombinant HGF, R&D Systems, cat. 294-HG, Minneapolis, MN, USA), 50 µM of a c-MET specific inhibitor (PF04217903; Sigma-Aldrich, cat. SML0263), or 5 µM of a Src inhibitor (Src Inhibitor-1; Sigma-Aldrich, cat. S2075).
We tested different concentrations (1 µM to 10 µM) of Src Inhibitor-1 on cell viability. 5 µM, was the highest concentration without toxic effect evaluated by trypan blue exclusion test, while, PF04217903 was used as already described in a recent work [21 (link)].
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2

Endothelial Cell Culture and Pharmacological Treatments

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Human Umbilical Vein Endothelial Cells (Lonza) were amplified in a 37°C incubator with 5% CO2 in endothelial growth media-2 (EGM-2, Lonza) with 5% FBS and 5 ng/ml rhFGF (Promega) and without heparin. Cells between passages 2 and 8 were used for all experiments. When indicated, cells were treated with 5 μM GW4869 (Sigma-Aldrich D1692), 5 μM Src Inhibitor 1 (Sigma-Aldrich S2075), 10 μM ketoconazole (Sanbio 15212-100), or an equivalent volume of DMSO for 48 h, with fresh drug or DMSO added after 24 h. When indicated, cells were treated with 100 ng/ml recombinant human VEGF165 (Peprotech 100-20) or an equal volume of water for 48 h. MDA-MB-231 cells were maintained in a 37°C incubator with 5% CO2 in DMEM with 5% FBS.
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3

Kinase Inhibitors Modulate Dendritic Cell-T Cell Conjugation

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BMDCs were incubated overnight with 1 μM ova or ova ICs. The following day, BMDCs were harvested, washed and resuspended in PBS at 1 × 107/ml and labelled for 20 minutes at 37 °C using CellTrace Far Red (1 μM, CTFR, Invitrogen), followed by quenching in culture media for 20 minutes at 37 °C. CTFR labelled BMDCs and CTV labelled WT OT-II CD4+ T cells were added to 1.5 ml tubes at 1:2 (1 × 105 BMDCs: 2 × 105 T cells, in a total volume of 50 μl), centrifuged for 2 minutes at 25 g and incubated at 37 °C for 0–120 minutes. Cells were fixed using 3% PFA in PBS, transferred to FACS tubes and acquired by flow cytometry using a medium flow rate. Conjugates were identified as CTV+ CTFR+ events. To identify the role of Src and Syk family kinases in conjugate formation, WT BMDCs were pre-incubated with Src inhibitor-1 (5 µM, Sigma) or Syk inhibitor II (5 µM, Calbiochem) for 15 minutes at 37 °C, prior to the conjugate assay (described above).
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4

Breast Cancer Cell Line Culturing

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The human breast cancer cell lines T47D, MCF-7, and SKBR3 (all authenticated by vendor, ATCC, Wesel, Germany) were cultured in Dulbecco's modified Eagle's medium (DMEM) (containing 4.5 mg/ml glucose) supplemented with 10% Fetal calf serum, FCS (all from ThermoFisher Scientific, Stockholm, Sweden) in 5% CO2 at 37°C in a humidified incubator. Prior to treatment with 10 nM estradiol (E2), 2 nM Heregulin-1β (HRG) (both from Sigma Aldrich, St Louis, MO, USA), 20 nM 4-hydroxytamoxifen (4-OHT, Tocris, Bristol, UK), and/or 500 nM Src inhibitor-1 (Sigma Aldrich) the cells were starved for 48h in phenol-free DMEM containing 0.5% Dextran-charcoal (DCC) treated FCS. The generation of stable NT, LZ, Sh5, Sh1, and pLHCX-Myc-Memo cell lines was described before [9 (link)]. All cell lines were confirmed to be mycoplasma free.
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5

Comparative Kinase Inhibitor Evaluation

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Bosutinib (SKI-606), Dasatinib (BMS-354825), KX2-391, and Saracatinib (AZD0530) were obtained from Selleck Chemicals. PP1, PP2, Src Inhibitor-1, and SU6656 were from Sigma.
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6

Inhibition of Signaling Pathways in HHV-6A Infection

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U87 cells were pretreated with small molecule inhibitors, dissolved in DMSO for 45 min, washed and then stimulated with HHV-6A (MOI = 1) for 5 h. Following inhibitors were used: 5 μM Bisindolylmaleimide I (Protein Kinases C inhibitor, Sigma) (39 (link)) or 5 μM Src Inhibitor-1 (Src kinase inhibitor, Sigma) or 40 μM Apigenin (Casein Kinase 2 inhibitor, Sigma) (40 (link)).
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7

Antibody Staining for SRC Signaling

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The following antibodies were used: rabbit antibodies against total (pan), Y419, and Y530 forms of SRC (all from Life Technologies), rabbit antibody SRC that cross-reacts with zebrafish (2108, Cell Signaling), tyrosine phosphorylation antibody 4G10 (Millipore), rabbit antibody for cortactin (H222, Cell Signaling), phalloidin-rhodamine for F-actin (Sigma), and mouse monoclonal against GAPDH (clone 4G5, Fitzgerald Industries International). SRC inhibitor-1 (Sigma) was used at 500 nM final concentration for all experiments except that 2 μM was added to zebrafish water.
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8

Overexpression and Knockdown Plasmids

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CD24 and CDK19 overexpression plasmids were constructed by cloning their PCR products into pLenti-puro plasmid (Addgene, Watertown, MA). Other plasmids were purchased from companies as follows: CD24 shRNA plasmid (Origene, Rockville, MD), miR-199a-3p, miR-34c, miR-199a-5p, miR-130a, miR-301a, miR-214, miR-34b* (Applied Biological Materials, Richmond, BC, Canada), miR-199a inhibitor, miR-130a inhibitor, miR-301a inhibitor, miR-34b* inhibitor (GeneCopoeia, Rockville, MD), and CDK19 shRNA plasmid (TRCN0000003140). Transfection was performed using Lipofectamine® LTX with Plus Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instruction. Src phosphorylation was inhibited by treating with Src inhibitor-1 (5 µM, Sigma-Aldrich, St. Louis, MO), and FAK phosphorylation was inhibited by treating with Focal Adhesion Kinase Inhibitor-1 (5 µM, Calbiochem, San Diego, CA).
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9

Cell Culture Conditions for OSCC and Prostate Cancer

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The OSCC cell lines HSC3, HSC4, SAS, Ca9-22, and KB, and the prostate cancer cell line DU145 used in this study were purchased from the RIKEN BioResource Center (Ibaraki, Japan). Cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% (v/v) fetal bovine serum (FBS) at 37 °C in a humidified atmosphere containing 5% CO2. DMEM and FBS were purchased from Gibco (Life Technologies, Tokyo, Japan). Cetuximab (Erbitux) was purchased from Merck Serono, Co., Ltd. (Tokyo, Japan). AG1478 and tumor necrosis factor protease inhibitor 2 (TAPI-2) were from Calbiochem (Merk Millipore, Tokyo, Japan), Src inhibitor-1 and PF573228 were from Sigma-Aldrich (Tokyo, Japan). Transforming growth factor (TGF)-α and neuregulin (NRG) 1 were purchased from R and D Systems (Minneapolis, MN, USA). HB-epidermal growth factor (EGF) was purchased from Wako Pure Chemical Industries, Ltd. (Osaka, Japan).
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10

Analysis of CDCP1 Signaling Pathways

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SuperScript™III, RPMI 1640 medium and Opti-MEM medium were obtained from Invitrogen (Carlsbad, CA). TriSolution Plus Reagent was from GeneMark (Atlanta, Georgia). RNAzol® RT RNA isolation reagent was purchased from Molecular Research Center, INC (Cincinnati, OH). GoScriptTM Reverse Transcriptase, Go Taq® Green Master Mix (2X), and luciferase assay system were from Promaga (Madison, WI). G418 disulfate salt was from Sigma-Aldrich (St. Louis, MO). Src inhibitor PP1 was from Calbiochem (Merck Millipore, Darmstadt, Germany). Src inhibitor-1 was from Merck Millipore (Burlington, MA, USA). HyFectTM DNA transfection reagent was from Leadgene Biomedical (Tainan, Taiwan). Antibodies against β-actin and Flag were obtained from Sigma-Aldrich (St. Louis, MO). E-cadherin and N-cadherin antibodies were obtained from BD Bioscience (Bedford, MA). MMP-2 antibody was purchased from Millipore (Billerica, MA). Antibodies against CDCP1, c-Src, pSrcTyr416, and pPKCδTyr314 were purchased from Cell Signaling Technology (Danvers, MA).
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